View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766-Insertion-17 (Length: 178)
Name: NF4766-Insertion-17
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766-Insertion-17 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 42205162 - 42204998
Alignment:
| Q |
7 |
agttagttttgtctcggttgtccatcttcatacaaacatgaattcacacaaaagtgaaaatttagtttccttcgtgttcgctttcgttcgttcgtccttt |
106 |
Q |
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| T |
42205162 |
agttagttttgtctcggttgtccttcttcatacaaacatgaattcacacaaaagtgaaaatttagtttccttcgtgttcgctttcgttcgt----ccttt |
42205067 |
T |
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| Q |
107 |
ttatttattttaaatttagcatataagtatcataaaccccgacacaagaagtacctaaaagggtaagggagc |
178 |
Q |
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| T |
42205066 |
tttttt---ttaaatttagcatataagtatcataaaccccgacacaagaagtacctaaaagggtaagggagc |
42204998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 435109 - 435039
Alignment:
| Q |
26 |
gtccatcttcatacaaacatgaattcacacaaaagtgaaaatttagtttccttcgtgttcgctttcgttcgt |
97 |
Q |
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| T |
435109 |
gtccttcttcatacaaacatgaattcacacaaaagtaaaaattcagtttccttcgtgtt-tctttcgttcgt |
435039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 20097099 - 20097165
Alignment:
| Q |
31 |
tcttcatacaaacatgaattcacacaaaagtgaaaatttagtttccttcgtgttcgctttcgttcgt |
97 |
Q |
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| T |
20097099 |
tcttcatacaaacatgaattcacacaaaagtaaaaattcagtttccttcgtgttcgctttcgttcgt |
20097165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 47237371 - 47237300
Alignment:
| Q |
26 |
gtccatcttcatacaaacatgaattcacacaaaagtgaaaatttagtttccttcgtgttcgctttcgttcgt |
97 |
Q |
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| T |
47237371 |
gtccttcttcatacaaacatgaattcaaacaaaagtgaaaattcaatttcgttcgtgttcgttttcattcgt |
47237300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 21266879 - 21266828
Alignment:
| Q |
36 |
atacaaacatgaattca--cacaaaagtgaaaatttagtttccttcgtgttc |
85 |
Q |
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| T |
21266879 |
atacaaacatgaattcacacacaaaaatgaaaattcagtttccttcatgttc |
21266828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 28; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 178
Target Start/End: Complemental strand, 19969460 - 19969425
Alignment:
| Q |
143 |
ccccgacacaagaagtacctaaaagggtaagggagc |
178 |
Q |
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| T |
19969460 |
ccccgacacaagcagtacctaaaatggtaagggagc |
19969425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 21023349 - 21023384
Alignment:
| Q |
143 |
ccccgacacaagaagtacctaaaagggtaagggagc |
178 |
Q |
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| T |
21023349 |
ccccgacacaagcagtacctaaaatggtaagggagc |
21023384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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