View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766-Insertion-2 (Length: 997)
Name: NF4766-Insertion-2
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 640; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 7 - 818
Target Start/End: Original strand, 29461901 - 29462710
Alignment:
| Q |
7 |
aaaaataaactacttgcatttttattttatgaacacttgcaattattattctt--agcacgaatcttagaattatattatctaaacaaacacatgcgcca |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461901 |
aaaaataaactacttgcatttttattttatgaacacttgcaattattattcttttagcacgaatcttagaattatattatctaaacaaacacatgcgcca |
29462000 |
T |
|
| Q |
105 |
accaaatcgattagttgtgtaggcacatctcaatgacgttgnnnnnnntgagtttatattaataaattaattttatgcatctttcaaaacaaacaaaatt |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29462001 |
accaaatcgattagttgtgtaggcacatctcaatgaagttgaaaaaaatgagtttatattaataaattaattttatgcatctttcaaaacaaacaaaatt |
29462100 |
T |
|
| Q |
205 |
aagcaactctctttaaactaattaatacaaacaatggagaatggaaaaagacctggataattatgtgtgaaagtatcccatatacttggtcctcttccac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29462101 |
aagcaactctctttaaactaattaatacaaacaatggataatagaaaaagacctggataattatgtgtgaaagtatcccatatacttggtcctcttccac |
29462200 |
T |
|
| Q |
305 |
caaaattggcagcaccttcatactgcaaatcaaccattgaaagttgaatttgatccnnnnnnnnnnc---cgtaagcgacatacttgtagacgaatttta |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| |||||||||| |||||||||||| |
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| T |
29462201 |
caaaattggcagcaccttcatactgcaaatcaaccattgaaagttgaatttgatccttttttttttcttccataagagacatacttggagacgaatttta |
29462300 |
T |
|
| Q |
402 |
tgttttttcttagttgattcgactttctttaatcgtgttacgtcatcaaatatattcgacatataacatctaacatgcacataatagtgaaagaatattg |
501 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
29462301 |
tgttttttcttagctgattcgactttctttaatcgtgttacgtcatcaaatatattcgacatataacatctaacatgtacataatagtgaaagaagattg |
29462400 |
T |
|
| Q |
502 |
aaatacttggagtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgattgagggaattgttaatatcatcatcggtt |
601 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
29462401 |
aaatacttggagtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatcattggtt |
29462500 |
T |
|
| Q |
602 |
aacaatattgtagcttcgattatagacacataggtaagaaattacaacaatccccagaaagaagaagaatatttcgtgccatgactatagtttgtatatt |
701 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29462501 |
aacaatattgtagcttcaattatagccacataggtaag-aattacaacaat-cccagaaagaagaagaatatttcgtgccatgact----tttgtatatt |
29462594 |
T |
|
| Q |
702 |
tgcttcatttcaaccaaggttgcgtagcttgggcccttataaataatatagtgggacttaattatggtgtgctgttaaactcaaatagttaaagaataat |
801 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29462595 |
tgcttcatttcaaccaaggttgcgtagcttgggcccttataaataatatagtggaacttaattat-ttgtgctgttaaactcaaatagttaaagaataat |
29462693 |
T |
|
| Q |
802 |
taagatcactctcaaga |
818 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
29462694 |
taagatcactctcaaga |
29462710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 512 - 631
Target Start/End: Complemental strand, 29420912 - 29420793
Alignment:
| Q |
512 |
agtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgattgagggaattgttaatatcatcatcggttaacaatattg |
611 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29420912 |
agtacctggtaagctgatgaagctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatcattggttaacaatattg |
29420813 |
T |
|
| Q |
612 |
tagcttcgattatagacaca |
631 |
Q |
| |
|
||||||| ||||||| |||| |
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|
| T |
29420812 |
tagcttcaattatagccaca |
29420793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 888 - 997
Target Start/End: Original strand, 29462804 - 29462911
Alignment:
| Q |
888 |
ttacattacgattttatatattcccactcatttttgtcaaaagaggtattgaactttaaacgaaacaaaat-atattattaccaacatttcttaccaaat |
986 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||| |
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|
| T |
29462804 |
ttacaatacgattttatatattcccactcatttttgtcaaaaaaggtattgaac-ttaaacg-aacaaaataatatta-taccaacatttcttaccaaaa |
29462900 |
T |
|
| Q |
987 |
ggaacaaaata |
997 |
Q |
| |
|
|||||||||| |
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|
| T |
29462901 |
tgaacaaaata |
29462911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 658 - 742
Target Start/End: Complemental strand, 29608018 - 29607935
Alignment:
| Q |
658 |
gaaagaagaagaatatttcgtgccatgactatagtttgtatatttgcttcatttcaaccaaggttgcgtagcttgggcccttata |
742 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
29608018 |
gaaagaagaagaatatttaatgccatgactatagttcgtatatttgcttca-ttcaaccaaagttgcgtagcttgggcccttata |
29607935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 227 - 328
Target Start/End: Complemental strand, 29421129 - 29421028
Alignment:
| Q |
227 |
taatacaaacaatggagaatggaaaaagacctggataattatgtgtgaaagtatcccatatacttggtcctcttccaccaaaattggcagcaccttcata |
326 |
Q |
| |
|
||||||||| |||| | || |||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| || ||||||||||| |
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| T |
29421129 |
taatacaaataatgcataaaggaaaagtacctggataattatgcgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcata |
29421030 |
T |
|
| Q |
327 |
ct |
328 |
Q |
| |
|
|| |
|
|
| T |
29421029 |
ct |
29421028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 485 - 567
Target Start/End: Complemental strand, 29608135 - 29608053
Alignment:
| Q |
485 |
atagtgaaagaatattgaaatacttggagtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactact |
567 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||||||||||||| ||| ||||| |||| |||| |||| |||||||||| |
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|
| T |
29608135 |
atagtaaaagaatattaaaatatttggagtacctggtaagctgatgaagcttttccagaaattaaacattctaggaaactact |
29608053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 29405233 - 29405155
Alignment:
| Q |
255 |
acctggataattatgtgtgaaagtatcccatatacttggtcctcttccaccaaaattggcagcaccttcatactgcaaa |
333 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||| ||||||||||| ||||||| ||| || ||||||||||||| |||| |
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|
| T |
29405233 |
acctggataattatgagtgtaagcatcccatatgcttggtcctctgccaccaacatttgctgcaccttcatactacaaa |
29405155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 328
Target Start/End: Complemental strand, 29608391 - 29608311
Alignment:
| Q |
248 |
gaaaaagacctggataattatgtgtgaaagtatcccatatacttggtcctcttccaccaaaattggcagcaccttcatact |
328 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||| ||||||||||| ||| ||| ||| || || |||||||||| |
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|
| T |
29608391 |
gaaaaagacctggataattatgtgtggaattatgccatattcttggtcctctgccaacaacatttgctgccccttcatact |
29608311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 491 - 578
Target Start/End: Complemental strand, 29404618 - 29404531
Alignment:
| Q |
491 |
aaagaatattgaaatacttggagtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgattgaggg |
578 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||| || |||||||||||||| ||||| ||||| |||||||| || ||||||| |
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| T |
29404618 |
aaagattattgaaaattttggactacctggtaagctgaagaagctgttccaaaaatgaaaccatctggaaaactactccggttgaggg |
29404531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 8089037 - 8088979
Alignment:
| Q |
515 |
acctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgatt |
573 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| ||||||||||||| ||| |||| |
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|
| T |
8089037 |
acctggtaagctgaagatgctgttccaaaaacaaaatcttctgggaaactgctttgatt |
8088979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 9212674 - 9212635
Alignment:
| Q |
255 |
acctggataattatgtgtgaaagtatcccatatacttggt |
294 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
9212674 |
acctggatatttatgggtgaaagtatcccatatacttggt |
9212635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 25181077 - 25181116
Alignment:
| Q |
266 |
tatgtgtgaaagtatcccatatacttggtcctcttccacc |
305 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||| |
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| T |
25181077 |
tatgagtgaaagtatcccatatacttgctcctcttccacc |
25181116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 25251965 - 25251926
Alignment:
| Q |
266 |
tatgtgtgaaagtatcccatatacttggtcctcttccacc |
305 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
25251965 |
tatgagtgaaagtatcccatatacttgctcctcttccacc |
25251926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 25041616 - 25041666
Alignment:
| Q |
278 |
tatcccatatacttggtcctcttccaccaaaattggcagcaccttcatact |
328 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||||||||||||||| |
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| T |
25041616 |
tatcccatatactttgtcctcttccaccttcatttgcagcaccttcatact |
25041666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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