View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4766-Insertion-4 (Length: 707)

Name: NF4766-Insertion-4
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4766-Insertion-4
NF4766-Insertion-4
[»] chr5 (1 HSPs)
chr5 (8-685)||(32930725-32931379)


Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 8 - 685
Target Start/End: Complemental strand, 32931379 - 32930725
Alignment:
Q  8 cttctgacataaacaaattctagtacttacataaattaatgttaaggttcctacaatttatactttcttattattattactcaaaaacaagggccggtgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  32931379 cttctgacataaacaaattctagtacttacataaattaatgttaaggttcctacaatttatacttgcttattattattactcaaaa-caagggccggtgg 32931281  T
Q  108 ttactactgtttgtgtgaccaaccaactaagaaaattgtggtattatttgtttgttgtgaaaccattaataatttaaaattattttcaatagaagtcaaa 207  Q
    |||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32931280 ttactactgtttgtgtgaccaaccaacta--------------ttatttgtttgttgtgaaaccattaataatttaaaattattttcaatagaagtcaaa 32931195  T
Q  208 acaaactatttaataatttgtggtatgatagattttaacaatcttgcttgatttagaaagtttctttggacagatgcaacaatactattaatagtcaata 307  Q
     |||||||||||||||||||| ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32931194 gcaaactatttaataatttgttgtatgatagattttaacaatcttg----atttagaaagtttctttggacagatgcaacaatactattaatagtcaata 32931099  T
Q  308 tcattattctataagtcacttttttctagtgattttaatttttgcaaatagatcaatttcaccatcaacatcaaaataactatcatg-tttagtacataa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32931098 tcattattctataagtcacttttttctagtgattttaatttttgcaaatagatcaatttcaccatcaacatcaaaataactatcatgttttagtacataa 32930999  T
Q  407 gtttcaagatatgtttgcaacatgctttaaaattacgatataccagataatgatccaagnnnnnnnnnnnnnnnnnnnngagtaaaaataatgaactatg 506  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||                    |||||||||||||||||||||    
T  32930998 gtttcaagatatgtttgcaacatgctttaaaattgcaatataccagataatgattcaag------tcttttttttttttgagtaaaaataatgaactatg 32930905  T
Q  507 atgcaaattactctcagtgaacacaactaatcaaccttttgtttgatgagtagtcttctaatacttattagtttaattttaatatattttagatcacaaa 606  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||     |||| |||||||||||||||||||    
T  32930904 atgcaaattactctcaacgaacacaactaatcaaccttttgtttgatgagtagtcttctaatacttattag-----ttttgatatattttagatcacaaa 32930810  T
Q  607 attgattcacat------catagacgacttacacatgtaagaatactttgaatttttgtttagtataataattagagtccataac 685  Q
    ||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32930809 attgattcacatcatagacatagacgacttacacatgtaagaatactttgaatttttgtttagtataataattagagtcaataac 32930725  T

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