View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766-Insertion-5 (Length: 695)
Name: NF4766-Insertion-5
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766-Insertion-5 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 361 - 695
Target Start/End: Complemental strand, 7446360 - 7446026
Alignment:
| Q |
361 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
460 |
Q |
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| T |
7446360 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactcttcttcaagttt |
7446261 |
T |
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| Q |
461 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
560 |
Q |
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| T |
7446260 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7446161 |
T |
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| Q |
561 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttttctccacctt |
660 |
Q |
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| T |
7446160 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttttctccacctt |
7446061 |
T |
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| Q |
661 |
tgttcttcttactacgcttgcgtcttggctttggt |
695 |
Q |
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| T |
7446060 |
tgttcttcttactacgcttgcgtcttggctttggt |
7446026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 361 - 695
Target Start/End: Complemental strand, 7461304 - 7460970
Alignment:
| Q |
361 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
460 |
Q |
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| T |
7461304 |
gaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgattttttttaagactgaagtactcttcttcaagttt |
7461205 |
T |
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| Q |
461 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
560 |
Q |
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| T |
7461204 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7461105 |
T |
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| Q |
561 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttttctccacctt |
660 |
Q |
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| T |
7461104 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttttctccacctt |
7461005 |
T |
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| Q |
661 |
tgttcttcttactacgcttgcgtcttggctttggt |
695 |
Q |
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| T |
7461004 |
tgttcttcttactacgcttgcgtcttggctttggt |
7460970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 7446710 - 7446419
Alignment:
| Q |
8 |
ttttcatttaaggggtttcttttctttttgctttgtcctaaagaaccggttgcatgctagtgtttcttctctctatcaacaacatttagtggattaaact |
107 |
Q |
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| T |
7446710 |
ttttcatttaaggggtttcttttctttttgctttgtcctaaagaaccggttgcatgctagtgtttcttctctctatcaacaacatttagtggattaaact |
7446611 |
T |
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| Q |
108 |
aagcaaacaacttttttagagctaaacgagaatagaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgc |
207 |
Q |
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| T |
7446610 |
aagcaaacaacttttttagagctaaacgagaatagaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgg |
7446511 |
T |
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| Q |
208 |
tgttgtgttgagacaaataaaaacaaaacactatagtaatataatattgttggaattaaaaaatttatgtctagttataatccaatcaactg |
299 |
Q |
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| T |
7446510 |
tgttgtgttgagacaaataaaaacaaaacactatagtaatataatattgttggaattaaaaaatttatgtcaagttataatccaatccactg |
7446419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 7461708 - 7461445
Alignment:
| Q |
8 |
ttttcatttaaggggtttcttttctttttgctttgtcctaaagaaccggttgcatgctagtgtttcttctctctatcaacaacatttagtggattaaact |
107 |
Q |
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| T |
7461708 |
ttttcatttaaggggtttcttttctttttgctttgtcctaaagaactcgttgcatgctagtgcctattctctctttcaaca---tttagggtattaaact |
7461612 |
T |
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| Q |
108 |
aagcaaacaacttttttag---agcta----aacga------gaatagaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaa |
194 |
Q |
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| T |
7461611 |
aagcaaacaacttttttaattaaacaataacaacaatatagtgaataaaaaaaaaatcaagaccaccagagaagaaacatggtagcatgcttgccctaaa |
7461512 |
T |
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| Q |
195 |
ttgacgttactgctgttgtgttgagacaaataaaaacaaaacactatagtaatataatattgttgga |
261 |
Q |
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| T |
7461511 |
ttgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatataatattgttgga |
7461445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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