View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4766-Insertion-6 (Length: 640)

Name: NF4766-Insertion-6
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4766-Insertion-6
NF4766-Insertion-6
[»] chr1 (1 HSPs)
chr1 (6-640)||(5159410-5160045)


Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 6 - 640
Target Start/End: Complemental strand, 5160045 - 5159410
Alignment:
Q  6 cattattctgtgacttcctctcttgtatccataccaatgagtcagtgtgctcgagtgcaacgcgtattttctccgggtcgcgccgcggaaaccctactgc 105  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160045 cattattctgcgacttcctctcttgtatccataccaatgagtcagtgtgctcgagtgcaacgcgtattttctccgggtcgcgccgcggaaaccctactgc 5159946  T
Q  106 tacgaatattttgttaagtgcttctaggtttaacccctctgcggttcggcggagaatgaaacctcgcttttctagggtttcgtcggatattgagagtggg 205  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5159945 tacaaatattttgttaagtgcttctaggtttaacccctctgcggttcggcggagaatgaaacctcgcttttctagggtttcgtcggatattgagagtggg 5159846  T
Q  206 tagtctaggcttgcttgacaagaaatggtgaggtttcgtgggtgagtttgtgatttgaagttaagtcgtagggaggatggaacaggagcatagatgttgc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5159845 tagtctaggcttgcttgacaagaaatggtgaggtttcgtgggtgagtttgtgatttgaagttaagtcgtagggaggatggaacaggagcatagatgttgc 5159746  T
Q  306 cacgtaagagcatattatcttatcacaagaacaagatacctcgtcttttttatgctctctctattcttcagaatttgtagnnnnnnncccctctgtttgt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  5159745 cacgtaagagcatattatcttatcacaagaacaagatacctcgtcttttttatgctctctctattcttcagaatttgtagtttttttcccctctgtttgt 5159646  T
Q  406 gacctttgtgtagtctgagaatgagtgatgttttttctggtttggtttgtggttgtgaaagagctgttgaggataatgtgattagtttggttggtaggta 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5159645 gacctttgtgtagtctgagaatgagtgatgttttttctggtttggtttgtggttgtgaaagagctgttgaggataatgtgattagtttggttggtagtta 5159546  T
Q  506 ttggctatgtgctttcttcttgttgggtccacaaatagccatgctttgcaa-ataaagtttagataagggaaaacataccatggagaattatcagttaaa 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5159545 ttggctatgtgctttcttcttgttgggtccacaaatagccatgctttgcaagataaagtttagataagggaaaacataccatggagaattatcagttaaa 5159446  T
Q  605 tttgacagattaaacacaggagtacttcttatgtgt 640  Q
    ||||||||||||||||||||||||||||||||||||    
T  5159445 tttgacagattaaacacaggagtacttcttatgtgt 5159410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University