View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4766-Insertion-7 (Length: 611)
Name: NF4766-Insertion-7
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766-Insertion-7 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 592; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 8 - 611
Target Start/End: Original strand, 34291622 - 34292225
Alignment:
| Q |
8 |
gctttcaatgatgcattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34291622 |
gctttcaatgatgcattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccac |
34291721 |
T |
|
| Q |
108 |
aaagcataagcaagagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggaggaagatga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34291722 |
aaagcataagcaagagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggaggaagatga |
34291821 |
T |
|
| Q |
208 |
ttgaacgtcgtttaattgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccacca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34291822 |
ttgaacgtcgtttaattgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccgcca |
34291921 |
T |
|
| Q |
308 |
cattcctttgcaacctcttttgctattggattgatatcttttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatcctctttca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34291922 |
cattcctttgcaacctcttttgctattggattgatatcatttctatctacaacttcccctcacagctctcgaaacagataccaagcttcatcctctttca |
34292021 |
T |
|
| Q |
408 |
acagaggtacttgaaaattgagttttcatcccatattttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagata |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34292022 |
acagaggtacttgaaaattgagttttcatcccatattttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagata |
34292121 |
T |
|
| Q |
508 |
aggaagtccaatacactcaaagtctagaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaattgcatg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34292122 |
aggaagtccaatacactcaaagtctagaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaattgcatg |
34292221 |
T |
|
| Q |
608 |
gctc |
611 |
Q |
| |
|
|||| |
|
|
| T |
34292222 |
gctc |
34292225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 602
Target Start/End: Original strand, 34566124 - 34566711
Alignment:
| Q |
15 |
atgatgcattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcat |
114 |
Q |
| |
|
|||||||| | |||| ||||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
34566124 |
atgatgcactgatgtctttgaacggacccaagccaaaaccatgacacaataaactttcaatgggaatgtcaaagtcttctggatacaatccacaaagcat |
34566223 |
T |
|
| Q |
115 |
aagcaagagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggaggaagatgattgaacg |
214 |
Q |
| |
|
||| ||||||||||||||| | || ||||||||||||||||||||||||| | |||||||| | ||||||||| | || ||| ||||||||||| |
|
|
| T |
34566224 |
aaggaagagcttatgttctctgctgtccaaaaactttaaactaagctcaatgctggggtagacaaattttccaacgtctgagaagggagatgattgaaaa |
34566323 |
T |
|
| Q |
215 |
tcgtttaattgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcct |
314 |
Q |
| |
|
| |||| ||||| |||||||| |||||||| |||||||||||||| || ||||||||||||| |||| |||||||||| || |||||||||||||||| |
|
|
| T |
34566324 |
tttcttaaatgtctaagtgcatcctcccatgccgacttcccttcattacttagtgctcttccaactgtcacaattgcaagaggcaagccaccacattcct |
34566423 |
T |
|
| Q |
315 |
ttgcaacctcttttgctattggattgatatcttttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatcctctttcaacagagg |
414 |
Q |
| |
|
|||||||||| |||||||||| |||||||| | | ||||||||| | | ||||||| ||||||||| ||||||||||| |||||||| ||||| || |
|
|
| T |
34566424 |
ttgcaacctcacttgctattgggttgatatcatatgtatctacaattccacctgacatctctcgaaatagataccaagcctcatcctccgacaacacaga |
34566523 |
T |
|
| Q |
415 |
tacttgaaaattgagttttcatcccatattttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagt |
514 |
Q |
| |
|
||||||||||| | || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34566524 |
aacttgaaaattcacattgcatcccaagtttttgcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagt |
34566623 |
T |
|
| Q |
515 |
ccaatacactcaaagtctagaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaatt |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34566624 |
ccaatacactcaaagtctagaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaatt |
34566711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 34554466 - 34554552
Alignment:
| Q |
31 |
tttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcataag |
117 |
Q |
| |
|
|||||||||||||||||| | || ||| | ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
34554466 |
tttgaacaatcccaagcccattgcgtgacataataaactttcaataggtatgtcaaagtcttccggaaacaatccacaaagcataag |
34554552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 34371825 - 34371746
Alignment:
| Q |
266 |
agtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgatatc |
345 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| || || |||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
34371825 |
agtgctcgtccaactgttgcaattgcaaggggcaaaccaccacattcccttgcaacctcacttgctattggattgatatc |
34371746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 34372020 - 34371977
Alignment:
| Q |
68 |
ctttcaataggaatgtcaaagtcttctggaaataatccacaaag |
111 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
34372020 |
ctttctataggaatgtcaaagtcctctggaaacaatccacaaag |
34371977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 34554723 - 34554776
Alignment:
| Q |
285 |
caattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggat |
338 |
Q |
| |
|
|||| ||||| || ||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
34554723 |
caatagcaagaggcaagcctccacattcctttgcaacttgttttgctattggat |
34554776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 549
Target Start/End: Original strand, 15895814 - 15896342
Alignment:
| Q |
15 |
atgatgcattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcat |
114 |
Q |
| |
|
|||||||| |||||| |||||||| |||||| || | ||||||| ||| |||| |||||||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
15895814 |
atgatgcagtaatgtgtttgaacattcccaaacccactgcatgatgcaacaaacattcaataggaatatcaaagtcttcaggaaacaatccacaaagcat |
15895913 |
T |
|
| Q |
115 |
aagcaagagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggaggaagatgattgaacg |
214 |
Q |
| |
|
||| || ||||| | |||||| || |||||||||||||||||||||||||| || |||| || | |||| ||||| | | |||||||||||||||| |
|
|
| T |
15895914 |
aaggaatagcttgtattctttgtttcccaaaaactttaaactaagctcaatgcgagggtggacaaatttttcaacatctgacgaggaagatgattgaaaa |
15896013 |
T |
|
| Q |
215 |
tcgtttaattgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcct |
314 |
Q |
| |
|
| |||||||| | |||| |||||||||||||||||||||||| |||| ||||||||||||| |||| |||||||||| || |||||||||||| ||| |
|
|
| T |
15896014 |
tttcttaattgtttaagtgtgtcttcccatgcagacttcccttcaatgcttagtgctcttccaactgtcacaattgcaaggggcaagccaccacatgcct |
15896113 |
T |
|
| Q |
315 |
ttgcaacctcttttgctattggattgatatcttttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatcctctttcaacagagg |
414 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | | | | |||||| || |||| || ||| |||| || ||||||||||||||| ||| | ||| |
|
|
| T |
15896114 |
ttgcaacctctcttgctattggattgatatcatgtttgtttacaacatctcctgccatttcttgaaataggctccaagcttcatcctccgacaatacagg |
15896213 |
T |
|
| Q |
415 |
tacttgaaaattgagttttcatcccatattttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagt |
514 |
Q |
| |
|
||||||||||| | | | ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
15896214 |
gacttgaaaattcactctgcatcccatattttggcacactttttgatcccgtgatgtgaacaatattttgcaatatttatcacgttct------tgaagt |
15896307 |
T |
|
| Q |
515 |
ccaatacactcaaagtctagaatatcccacacatc |
549 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||| |
|
|
| T |
15896308 |
ccaatacgctcaaaatcaagaatatcccacacatc |
15896342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 130330 - 130244
Alignment:
| Q |
31 |
tttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcataag |
117 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
130330 |
tttgaacaatcccaagcctattgcatgacgcaataaaatttcaataggaatatcaaagtcttctggaaataatccacaaagcataag |
130244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University