View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766-Insertion-8 (Length: 552)
Name: NF4766-Insertion-8
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766-Insertion-8 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 270 - 552
Target Start/End: Original strand, 10369798 - 10370077
Alignment:
| Q |
270 |
catacaactgtctattttcatcatcaacatgtgttaccgacacttacagagggaggaaatattggaaaaaagtgaacttagttaatttaataagaaa-ct |
368 |
Q |
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| T |
10369798 |
catacaactgtctattttcatcatcaacatgtgttaccgacactta----gggaggaaatattggaaaaaagtgaacttagttaatttaataagaaaact |
10369893 |
T |
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| Q |
369 |
ctcaagactcttatgtctgattgtccgattgtccaaaaggtctattataaattgcataatggttttttatatttagttaactttaatagaacacatatga |
468 |
Q |
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| T |
10369894 |
ctcaagactcttatgtctgattgtccgattgtccaaaaggtctattataaattgcataatgattttttatatttagttaactttaatagaacacatatga |
10369993 |
T |
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| Q |
469 |
ttggttttctggttattgtatactaatagttgtaaactaacacacgtaaaaagatatgacggaacatcatctatgtggtatata |
552 |
Q |
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| T |
10369994 |
ttggttttctggttattgtatactaacagttgtaaaccaacacacgtaaaaagatatgacggaacatcatctatgtggtatata |
10370077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 10368883 - 10369154
Alignment:
| Q |
7 |
atttttaatttatcttagtttaacaatacgaaggagaaaaagagagcaatttatctggnnnnnnnggagatcgtgttatggtttatcttagtctaaatga |
106 |
Q |
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| T |
10368883 |
atttttaatttatcttagtttaacaatacgaaggagaaaaagagagcaatttatctggaaaaaaaggagatcgtgttatggtttatcttagtctaaatga |
10368982 |
T |
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| Q |
107 |
actttttaaccttcaattgcttttaatgcgaatannnnnnnnnaccgtatttttctctttcaatcattcaatttccatacatggtcatcaatgatatagt |
206 |
Q |
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| T |
10368983 |
actttttaaccttcaattgcttttaatacgaatatttttttttaccgtatttttctctttcaatcattcaatttccatacatggtcatcaatgatatagt |
10369082 |
T |
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| Q |
207 |
agaagcatatttattggtgaaaatgaaaatcattatggatacgtgatattatttaatttaatccatacaact |
278 |
Q |
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| T |
10369083 |
agaagcatatttattggtgaaaatgaaaatcattatggatacgtgatattatttaatttaatccatacaact |
10369154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 10370896 - 10370762
Alignment:
| Q |
218 |
tattggtgaaaatgaaaatcattatggatacgtgatattatttaatttaatccatacaactgtctattttcatcatca---acatgtgttaccgac---- |
310 |
Q |
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| T |
10370896 |
tattgctgaaaatgaaaatcattatgggtatgtgattttttttaatttaatttatacaactgtttattatcatcatcatctacatgtgttattgacactt |
10370797 |
T |
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| Q |
311 |
acttacagagggaggaaatattggaaaaaagtgaa |
345 |
Q |
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| T |
10370796 |
acttacacatggaggaaatattggcaaaaagtgaa |
10370762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 490
Target Start/End: Complemental strand, 10370723 - 10370659
Alignment:
| Q |
426 |
aatggttttttatatttagttaactttaatagaacacatatgattggttttctggttattgtata |
490 |
Q |
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| T |
10370723 |
aatggttttttgaatttagttaactttaatagagcatgtataattggttttttagttattgtata |
10370659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 272 - 490
Target Start/End: Complemental strand, 11684230 - 11684009
Alignment:
| Q |
272 |
tacaactgtctattttcatcatcaacatgtgttaccgacacttacagagggaggaaatattggaaaaaagtgaacttagttaatttaata---agaaact |
368 |
Q |
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| T |
11684230 |
tacaactatttattttcatcgtcaacatgtgttcctgacacttacacagggaggaaatactggcacaaagtgaacttgggtcgtgggataccggaaaacc |
11684131 |
T |
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| Q |
369 |
ctcaagactcttatgtctgattgtccgattgtccaaaaggtctattataaattgcataatggttttttatatttagttaactttaatagaacacatatga |
468 |
Q |
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| T |
11684130 |
cttaagactctgatgcctgattctccggttgaccaagcggttagttataaattgcataatactattttatatatagttaactttaactgagcatgtataa |
11684031 |
T |
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| Q |
469 |
ttggttttctggttattgtata |
490 |
Q |
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| T |
11684030 |
ttggttttctggttactgtata |
11684009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 371 - 458
Target Start/End: Complemental strand, 24995460 - 24995373
Alignment:
| Q |
371 |
caagactcttatgtctgattgtccgattgtccaaaaggtctattataaattgcataatggttttttatatttagttaactttaataga |
458 |
Q |
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| T |
24995460 |
caagactcgaatgcctgattgtccggttgaccagaaggtcatttataatttgcataatggtatttaatatttagttaactttaataga |
24995373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 270 - 451
Target Start/End: Original strand, 24995595 - 24995779
Alignment:
| Q |
270 |
catacaactgtctattttcatcatcaacatgtgttaccgacacttacagagggaggaaatattggaaaaaagtgaacttagt-taatttaata---agaa |
365 |
Q |
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| T |
24995595 |
catacaactatttattttcatcgtcaacat-tgttactgacacttacacagggaggaaatactgccaaaaagtgaacttggggtcgtgggatatcgaaaa |
24995693 |
T |
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| Q |
366 |
actctcaagactcttatgtctgattgtccgattgtccaaaaggtctattataaattgcataatggttttttatatttagttaactt |
451 |
Q |
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| T |
24995694 |
accctcaagactccgatgtacgattgtccgattgaccaggagatcagttataaattgcataatggtattttatatttagttaactt |
24995779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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