View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766-Insertion-9 (Length: 529)
Name: NF4766-Insertion-9
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 55180775 - 55181130
Alignment:
| Q |
8 |
gttgcatccaaatcaacaactttaaacaatgtaggttcaagtgaagagatattgttagttatttctcaagtcgcgccatcatttttattttaaaacatac |
107 |
Q |
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| T |
55180775 |
gttgcatccaaatcaacaactttaaacaatgtaggttcaagagaagagatattgttatttatttctcaagtcgcgccatcatttttattttaaaacatac |
55180874 |
T |
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| Q |
108 |
tattgctgactgagaaccatgacataataatcatctataatattaatattagaagcagccctctctatgcgtcttaaaatcaaactttgattgttcttca |
207 |
Q |
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| T |
55180875 |
tattgctgactgagaaccatgacataataatcatcta------taatattagaagcagccctctctatgcgtcttaaaatcaaactttgattgttcttcg |
55180968 |
T |
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| Q |
208 |
ttttcctttcctccaattttatttaacacctttccaacaatgaattttgagtcaaaaaccatttcatc--nnnnnnnnnaataaaataaagtggaattaa |
305 |
Q |
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| T |
55180969 |
ttttcctttcctccaattttatttaacacctttccaacaatgaattttgagtcaaaaaccatttcatctttttttttttaataaaataaagtggaattaa |
55181068 |
T |
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| Q |
306 |
agattatattgtttaagttgaattggataagcaattgaccaacaatagattaatccaagtta |
367 |
Q |
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| T |
55181069 |
agattatattgtttaagttgaatttgataagcaattgaccaacaatagattaatccaagtta |
55181130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 383 - 512
Target Start/End: Original strand, 55181210 - 55181339
Alignment:
| Q |
383 |
aaggaattgcatttcattccgtctaatactaaacnnnnnnncttcttttcattttgtatatcatgagaatgagaaagaccaagtcttttcctctatttta |
482 |
Q |
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| T |
55181210 |
aaggaattgcatttgattccgtctaatactaaactttttttcttcctttcattttgtatatcatgagaatgagaaagaccaagtcttttcctctatttta |
55181309 |
T |
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| Q |
483 |
ttttattgtaaaataattcaaacaattgaa |
512 |
Q |
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| T |
55181310 |
ttttattgtaaaataattcaaacaattgaa |
55181339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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