View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766_high_1 (Length: 491)
Name: NF4766_high_1
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 30782250 - 30782718
Alignment:
| Q |
18 |
ctttcatgggcctttgtaacacggaattgttgcaactgactccgttcaagaaaacaactctgtccattccatatttttaaaagacttttggaagtgtatt |
117 |
Q |
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| T |
30782250 |
ctttcatgggaatttgtaacacggaattgttgcaaccgactccgttcaagaaaacaactctgtccattccatatttttaaaagatttttggaagtatatt |
30782349 |
T |
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| Q |
118 |
tcttgaatatatttttgttcgaaatatacattaagagacacacaactatgannnnnnnnnnccttccaaatttgatcattggaagtgattaagaagtttg |
217 |
Q |
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| T |
30782350 |
tctcgaatatatttttgttcgaaatatacattaagagacacacaactatgattttttttt-ccttccaaatttgttcattggaagtgattaagaagtttg |
30782448 |
T |
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| Q |
218 |
tgaagtttcagatcaatttcttgtatttaagaaacacaaaattacacacattaatgtatctaagtcatccattgagatcgattcatattacac-ttccat |
316 |
Q |
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| T |
30782449 |
tgaagtttcagatcaatttcttgtatttaagaaacacaaaattacacacattaatgtatctaagtcatccattgagatcgattcatattacaccttccat |
30782548 |
T |
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| Q |
317 |
taaataatccaaaagtttatgtatctaaatcttcctttccaattggcaatatggtttgcaacactttcaatggtgtttacttatatgtcagccgtttacg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30782549 |
taaataatccaaaagtttatgtatctaaatcttcctttccaattggcgatatggtttgcaacactttcaatggtgtttacttatatgtcagccgtttacg |
30782648 |
T |
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| Q |
417 |
cgatcactaggaatctggataactgatacaatggatgggtcatgttttctgcgtttgctcctttgcttct |
486 |
Q |
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| T |
30782649 |
cgatcactaggaatctgtataactgatacaatggatgggtcatgttttctgcgtttgctcctttgcttct |
30782718 |
T |
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