View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4766_high_10 (Length: 329)
Name: NF4766_high_10
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 5747255 - 5747553
Alignment:
| Q |
14 |
gatgaacaagatcaagttctaatttataatattcaatttgagcttgaaggtcttgaatatatttataacaaccaccaacgggatcattagcccgcatatc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5747255 |
gatgaacaagatcaagttctaatttataatattcaatttgagcttgaagatcttgaatatatttataacaaccaccaacaggatcattagcccgcatatc |
5747354 |
T |
|
| Q |
114 |
agattgaaaaatgatcgtcctcatggcttgatctttaagaggagggtcaagaaatttaatgattttattaatgttgctaactccaaataatttgtgtgca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5747355 |
agattgaaaaatgatcgtcctcatggcttgatctttaagaggagggtcaagaaatttaatgattttattaatgttgctaactccaaataatttgtgtgca |
5747454 |
T |
|
| Q |
214 |
ttaaggaattgtctttgtctatcatgaggaaagtaaggtgctagaatgcaatcaggtgcacattttctacgttggtatttacatgcagcacatgcttga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5747455 |
ttaaggaattgtctttgtctatcatgaggaaagtaaggtgctagaatgcaatcaggtgcacattttctacgttggtatttacatgcagcacatgcttga |
5747553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 42933514 - 42933407
Alignment:
| Q |
51 |
ttgagcttgaaggtcttgaatatatttataacaaccaccaacgggatcattagcccgcatatcagattgaaaaatgatcgtcctcatggcttgatcttta |
150 |
Q |
| |
|
||||| |||||| | |||||| || |||||||||||||||| ||||| |||| |||||||||||||||||||| || | ||||||| |||||| || |
|
|
| T |
42933514 |
ttgagattgaagctgttgaatgaatctataacaaccaccaacaggatccatagcacgcatatcagattgaaaaataatagaactcatggtatgatctcta |
42933415 |
T |
|
| Q |
151 |
agaggagg |
158 |
Q |
| |
|
||| |||| |
|
|
| T |
42933414 |
agatgagg |
42933407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 38731374 - 38731336
Alignment:
| Q |
243 |
aaagtaaggtgctagaatgcaatcaggtgcacattttct |
281 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
38731374 |
aaagtaaggtgcaaaaatgcaatcaggtgcacattttct |
38731336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University