View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766_high_12 (Length: 319)
Name: NF4766_high_12
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 6 - 317
Target Start/End: Original strand, 44548719 - 44549031
Alignment:
| Q |
6 |
atttgtaacaattttactggatcttcgctaatttattggcgcaaacaagtgttatcttcatctgaagttttgaatattcttgtaatttatattgtatgat |
105 |
Q |
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| T |
44548719 |
atttgtaacaattttactggatcttcgctaatttattggcgcaaacaagtgttatcttcatctgaagttttgaatattcttgtaatttatattgtatgat |
44548818 |
T |
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| Q |
106 |
atcatcttcaaaaacttgcatcatggtattagtttagaattagacttggtaatttggttagtggttctcctgtattgccctctttttgatccatatgttt |
205 |
Q |
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| T |
44548819 |
atcatcttcaaaaacttgcatcatggtattagtttagaattagacttggtaatttggttagtggttctcctgtattgccctctttttgatccatatgttt |
44548918 |
T |
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| Q |
206 |
tgtgttatgttatcgatcagcattcgccactagaaggagggttcatgccatggagggatccatcgtg-tttggatgaactaccacaacaataagaaagga |
304 |
Q |
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| T |
44548919 |
tgtgttatgttatcgatcagcattcgccgctagaaggagggttcatgccatggagggatccatcgtgtttttgatgaactaccacaacaataagaaagga |
44549018 |
T |
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| Q |
305 |
tgatagttctgtg |
317 |
Q |
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| T |
44549019 |
tgatagttctgtg |
44549031 |
T |
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