View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4766_high_2 (Length: 475)

Name: NF4766_high_2
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4766_high_2
NF4766_high_2
[»] chr1 (10 HSPs)
chr1 (24-251)||(38278905-38279132)
chr1 (39-240)||(38279876-38280077)
chr1 (387-464)||(38278690-38278768)
chr1 (173-242)||(39574479-39574547)
chr1 (173-229)||(9758448-9758504)
chr1 (136-242)||(24515404-24515509)
chr1 (173-226)||(41140873-41140926)
chr1 (173-229)||(9765063-9765119)
chr1 (200-247)||(12017844-12017890)
chr1 (173-242)||(24523191-24523259)
[»] scaffold0045 (1 HSPs)
scaffold0045 (110-247)||(30062-30198)
[»] chr7 (8 HSPs)
chr7 (172-242)||(40771222-40771291)
chr7 (173-229)||(48853596-48853652)
chr7 (173-229)||(267830-267886)
chr7 (173-229)||(278897-278953)
chr7 (173-230)||(29148801-29148858)
chr7 (173-229)||(5172866-5172922)
chr7 (193-229)||(32517114-32517150)
chr7 (157-229)||(40771711-40771783)
[»] scaffold0502 (2 HSPs)
scaffold0502 (173-242)||(4221-4289)
scaffold0502 (173-242)||(8921-8989)
[»] chr8 (6 HSPs)
chr8 (173-229)||(32038193-32038249)
chr8 (173-247)||(1262299-1262372)
chr8 (173-244)||(44626105-44626175)
chr8 (173-242)||(18324778-18324846)
chr8 (193-230)||(45272815-45272852)
chr8 (191-247)||(39517321-39517376)
[»] chr2 (10 HSPs)
chr2 (142-229)||(25336176-25336263)
chr2 (173-229)||(23888483-23888539)
chr2 (173-229)||(23892559-23892615)
chr2 (173-244)||(662763-662833)
chr2 (173-242)||(15144351-15144419)
chr2 (173-242)||(39190093-39190161)
chr2 (173-228)||(17527397-17527452)
chr2 (173-242)||(669997-670065)
chr2 (173-242)||(41826548-41826616)
chr2 (173-229)||(3949997-3950053)
[»] chr5 (5 HSPs)
chr5 (173-243)||(35941205-35941274)
chr5 (173-244)||(36950219-36950289)
chr5 (173-247)||(22729812-22729885)
chr5 (173-229)||(11339821-11339877)
chr5 (193-229)||(43097442-43097478)
[»] scaffold0040 (2 HSPs)
scaffold0040 (173-230)||(67770-67827)
scaffold0040 (173-230)||(60294-60351)
[»] chr3 (14 HSPs)
chr3 (173-226)||(29961009-29961062)
chr3 (173-226)||(30010214-30010267)
chr3 (173-230)||(39039843-39039900)
chr3 (173-229)||(11172099-11172155)
chr3 (173-229)||(39032831-39032887)
chr3 (172-242)||(41272949-41273018)
chr3 (173-242)||(3469836-3469904)
chr3 (97-226)||(38445645-38445774)
chr3 (173-229)||(32280860-32280916)
chr3 (173-229)||(50158171-50158227)
chr3 (173-228)||(31112377-31112432)
chr3 (173-242)||(10626377-10626445)
chr3 (173-242)||(19240602-19240670)
chr3 (200-244)||(32285831-32285874)
[»] scaffold1634 (1 HSPs)
scaffold1634 (173-229)||(115-171)
[»] chr6 (4 HSPs)
chr6 (173-229)||(23848656-23848712)
chr6 (173-224)||(9972775-9972826)
chr6 (200-242)||(15121637-15121678)
chr6 (173-242)||(18338097-18338165)
[»] chr4 (7 HSPs)
chr4 (173-229)||(18891192-18891248)
chr4 (173-240)||(36048876-36048942)
chr4 (136-242)||(35905039-35905144)
chr4 (173-229)||(2228853-2228909)
chr4 (173-242)||(6262189-6262257)
chr4 (173-226)||(42567733-42567786)
chr4 (173-229)||(33361635-33361691)
[»] scaffold0027 (1 HSPs)
scaffold0027 (110-230)||(134572-134692)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 38279132 - 38278905
Alignment:
Q  24 agagtatgagagggatgactccctcatcgttgtttaagtttgcagaataggttttcagcgtatgttaaacgattgatgagataacttttaaatagctaaa 123  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38279132 agagtatgagagggatgactccctcatcgttgtttaggtttgcggaataggttttcagcgtatgttaaacgattgatgagataacttttaaatagctaaa 38279033  T
Q  124 caattgacgattgagacttctcattggacctaactaaatgagtcaagatatcacggtccattcagagacaatagtccaatcatacatattcatcaactaa 223  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38279032 caattgacgatcgagacttctcattggacctaactaaatgagtcaagatatcacggtccattcagagacaatagtccaatcacacatattcatcaactaa 38278933  T
Q  224 ttagtgtattaacacaataaatcacctt 251  Q
    ||||||||||||||||||||||||||||    
T  38278932 ttagtgtattaacacaataaatcacctt 38278905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 240
Target Start/End: Complemental strand, 38280077 - 38279876
Alignment:
Q  39 tgactccctcatcgttgtttaagtttgcagaataggttttcagcgtatgttaaacgattgatgagataacttttaaatagctaaacaattgacgattgag 138  Q
    ||||||| ||||| |||| || ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||    ||| | |||||    
T  38280077 tgactccgtcatcattgtctaggtttgcagaataggttttcagtgtatgttaaacgatcgatgagataacgtttaaatacctaaatggctgatggttgag 38279978  T
Q  139 acttctcattggacctaactaaatgagtcaagatatcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacac 238  Q
    |||||||||||  | |||||||||||||||||||||||  || |||| | |||||||||  |||||| |||||||||| ||||||||||||  |||||||    
T  38279977 acttctcattgagcttaactaaatgagtcaagatatcatagttcatttaaagacaatagaacaatcacacatattcatgaactaattagtgctttaacac 38279878  T
Q  239 aa 240  Q
    ||    
T  38279877 aa 38279876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 387 - 464
Target Start/End: Complemental strand, 38278768 - 38278690
Alignment:
Q  387 aatatagacaaatgtaatggttttctaactatcaaacttt-aatctcattcttagtatttcttcgtcatctcaattcat 464  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38278768 aatatagacaaatgtaatggttttctaactatcaaactttgaatctcattcttagtatttcttcgtcatctcaattcat 38278690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 39574547 - 39574479
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| ||| | ||||| ||||||| |||||||||||||||||||||||  |||||||||||    
T  39574547 atcacggtccatttagaaagaatagcccaatcacacatattcatcaactaattagtg-cttaacacaata 39574479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 9758448 - 9758504
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | ||||| |||||||||||||||||||||||||| ||||    
T  9758448 atcacggtccatttagaaagaatagcccaatcatacatattcatcaactaatgagtg 9758504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 24515404 - 24515509
Alignment:
Q  136 gagacttctcattggacctaactaaatgagtcaagatatcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaa 235  Q
    ||||| ||||||||||| || |||||||   |||   ||||||||||||| ||| | ||||| || |||| |||||||||||||||||||||||  ||||    
T  24515404 gagacctctcattggacttagctaaatggtccaacccatcacggtccatttagaaagaatagcccgatcacacatattcatcaactaattagtg-cttaa 24515502  T
Q  236 cacaata 242  Q
    |||||||    
T  24515503 cacaata 24515509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 41140926 - 41140873
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaatta 226  Q
    ||||||||||||| | | | ||||| ||||||||||||||||||||||||||||    
T  41140926 atcacggtccatttaaaaagaatagaccaatcatacatattcatcaactaatta 41140873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 9765063 - 9765119
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| | | | ||||| |||||||||||||||||||||||||| ||||    
T  9765063 atcacggtccatttataaagaatagcccaatcatacatattcatcaactaatgagtg 9765119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 12017844 - 12017890
Alignment:
Q  200 caatcatacatattcatcaactaattagtgtattaacacaataaatca 247  Q
    |||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  12017844 caatcagacatattcatcaactaattagtgt-ttaacacaatagatca 12017890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 24523191 - 24523259
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| | | | ||||| ||||||| ||||||||||||| |||||||||  |||||||||||    
T  24523191 atcacggtccatttaaaaagaatagaccaatcacacatattcatcaattaattagtg-cttaacacaata 24523259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 30198 - 30062
Alignment:
Q  110 tttaaatagctaaacaattgacgattgagacttctcattggacctaactaaatgagtcaagatatcacggtccattcagagacaatagtccaatcataca 209  Q
    |||||||||||||||   ||| | | ||||| ||||||||||| || |||||||  ||||   ||||||||||||| ||| | |||||  |||||| |||    
T  30198 tttaaatagctaaacggctgaaggtagagacctctcattggacttagctaaatggttcaatccatcacggtccatttagaaagaatagctcaatcacaca 30099  T
Q  210 tattcatcaactaattagtgtattaacacaataaatca 247  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  30098 tattcatcaactaattagtgt-ttaacacaatagatca 30062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 40771291 - 40771222
Alignment:
Q  172 tatcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||| |||||| ||| ||||||| ||||||| |||||||||||||||||||||||| |||||||||||    
T  40771291 tatcacgttccatttagaaacaatagcccaatcacacatattcatcaactaattagtgt-ttaacacaata 40771222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 48853652 - 48853596
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  48853652 atcacggtccatttagaaagaatagtccaatcatacatattcatcaactaatgagtg 48853596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 267830 - 267886
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | ||||| ||||||| |||||||||||||||||||||||    
T  267830 atcacggtccatttagaaagaatagcccaatcagacatattcatcaactaattagtg 267886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 278897 - 278953
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | ||||| ||||||| |||||||||||||||||||||||    
T  278897 atcacggtccatttagaaagaatagcccaatcagacatattcatcaactaattagtg 278953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 29148801 - 29148858
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgt 230  Q
    ||||| ||||||| ||| | |||| || || |||||||||||||||||||||||||||    
T  29148801 atcaccgtccatttagaaagaataatcgaaacatacatattcatcaactaattagtgt 29148858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 5172922 - 5172866
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    |||| |||| ||| ||| |||||| |||||||| | |||||||||||||||||||||    
T  5172922 atcatggtcaatttagaaacaataatccaatcacatatattcatcaactaattagtg 5172866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 32517150 - 32517114
Alignment:
Q  193 aatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  32517150 aatagcccaatcatacatattcatcaactaataagtg 32517114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 40771711 - 40771783
Alignment:
Q  157 ctaaatgagtcaagatatcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    |||||||||||||   ||||||||||||| ||| |||||||  |||||| |||||||||  | ||||||||||    
T  40771711 ctaaatgagtcaattcatcacggtccatttagaaacaatagctcaatcacacatattcactagctaattagtg 40771783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 4289 - 4221
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| ||| | ||||||||||||| |||||||||| ||||||||||||| |||||||||||    
T  4289 atcacggtccatttagaaagaatagtccaatcacacatattcataaactaattagtgt-ttaacacaata 4221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 8989 - 8921
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| ||| | |||||  |||||| |||||||||| ||||||||||||  |||||||||||    
T  8989 atcacggtccatttagaaagaatagatcaatcacacatattcataaactaattagtg-cttaacacaata 8921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 32038193 - 32038249
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  32038193 atcacggtccatttagaaagaatagtccaatcatacatattcatcaactaatgagtg 32038249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 1262372 - 1262299
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaataaatca 247  Q
    ||||||||||||| ||| | ||||| ||||||| |||||||||||||||||||||||  ||||||||||| ||||    
T  1262372 atcacggtccatttagaaagaatagcccaatcacacatattcatcaactaattagtg-cttaacacaatagatca 1262299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 44626175 - 44626105
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaataaa 244  Q
    ||||||||||||| ||| | |||||  |||| | |||||||||||||||||||||||  |||||||||||||    
T  44626175 atcacggtccatttagaaagaatagctcaattagacatattcatcaactaattagtg-cttaacacaataaa 44626105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 18324846 - 18324778
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| ||| | |||||| |||||  || ||||||||||||||||||||  |||||||||||    
T  18324846 atcacggtccatttagaaagaatagttcaatcgcacttattcatcaactaattagtg-cttaacacaata 18324778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 45272815 - 45272852
Alignment:
Q  193 aatagtccaatcatacatattcatcaactaattagtgt 230  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  45272815 aatagtccaattacacatattcatcaactaattagtgt 45272852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 39517376 - 39517321
Alignment:
Q  191 acaatagtccaatcatacatattcatcaactaattagtgtattaacacaataaatca 247  Q
    |||||||| |||||| ||||||||||| |||||||||||  ||||||||||| ||||    
T  39517376 acaatagttcaatcacacatattcatcgactaattagtg-cttaacacaatatatca 39517321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 25336263 - 25336176
Alignment:
Q  142 tctcattggacctaactaaatgagtcaagatatcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||| ||| ||||||||||  ||||   ||||||||||||| ||| | |||||| |||||| |||||||||||||||||||||||    
T  25336263 tctcattagacttaactaaatggttcaacccatcacggtccatttagaaagaatagttcaatcacacatattcatcaactaattagtg 25336176  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 23888483 - 23888539
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | |||||||| ||||||||||||||||||||||| ||||    
T  23888483 atcacggtccatttagaaagaatagtccgatcatacatattcatcaactaatgagtg 23888539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 23892559 - 23892615
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | |||||||| ||||||||||||||||||||||| ||||    
T  23892559 atcacggtccatttagaaagaatagtccgatcatacatattcatcaactaatgagtg 23892615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 662833 - 662763
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaataaa 244  Q
    ||||||||||||| ||| | |||||  |||||| ||||||||||||| |||||||||| |||||||||||||    
T  662833 atcacggtccatttagaaagaatagctcaatcacacatattcatcaagtaattagtgt-ttaacacaataaa 662763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 15144351 - 15144419
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| ||| | |||||  |||||| |||||||||||||||||||||||  |||||||||||    
T  15144351 atcacggtccatttagaaagaatagcacaatcacacatattcatcaactaattagtg-cttaacacaata 15144419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 39190161 - 39190093
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| ||  ||||||| |||||||  ||||||||||||||||||| ||| |||||||||||    
T  39190161 atcacggtccatttagtaacaatagcccaatcactcatattcatcaactaattaatgt-ttaacacaata 39190093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 17527397 - 17527452
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagt 228  Q
    ||||||||||||| ||| | ||| | ||||||| ||||||||||||||||||||||    
T  17527397 atcacggtccatttagaaagaatggcccaatcacacatattcatcaactaattagt 17527452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 670065 - 669997
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| ||| | |||||  |||||| ||||||||||||| |||||||||  |||||||||||    
T  670065 atcacggtccatttagaaagaatagatcaatcacacatattcatcaagtaattagtg-cttaacacaata 669997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 41826616 - 41826548
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| | | | |||||  |||||| |||||||||||||||||||||||  |||||||||||    
T  41826616 atcacggtccatttaaaaagaatagctcaatcaaacatattcatcaactaattagtg-cttaacacaata 41826548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 3950053 - 3949997
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | |||||| |||||| ||||||| ||||| |||||||||    
T  3950053 atcacggtccatttagaaagaatagttcaatcacacatatttatcaattaattagtg 3949997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 35941205 - 35941274
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaataa 243  Q
    ||||| ||||||| ||| | ||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  35941205 atcacagtccatttagaaagaatagtccaatcacacatattcatcaactaattagtg-cttaacacaataa 35941274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 36950219 - 36950289
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaataaa 244  Q
    ||||||||||||| | | | |||||  |||||| |||||||||||||||||||||||  |||||||||||||    
T  36950219 atcacggtccatttataaagaatagctcaatcacacatattcatcaactaattagtg-cttaacacaataaa 36950289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 22729885 - 22729812
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaataaatca 247  Q
    ||||| ||||||| ||| | ||||| || |||| |||||||||||||||||||||||  ||||||||||| ||||    
T  22729885 atcacagtccatttagaaagaatagcccgatcacacatattcatcaactaattagtg-cttaacacaatagatca 22729812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 11339877 - 11339821
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | ||||||||||||| | |||||||| ||||||| ||||    
T  11339877 atcacggtccatttagaaagaatagtccaatcacatatattcattaactaatcagtg 11339821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 43097478 - 43097442
Alignment:
Q  193 aatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  43097478 aatagtccaatcacacatattcatcaactaactagtg 43097442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 67827 - 67770
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgt 230  Q
    ||||||||||||| ||| | ||||| |||||||||||||||||||||||||| |||||    
T  67827 atcacggtccatttagaaagaatagcccaatcatacatattcatcaactaatgagtgt 67770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 60351 - 60294
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgt 230  Q
    ||||||||||||| ||  | ||||| |||||||||||||||||||||||||| |||||    
T  60351 atcacggtccatttagtaagaatagcccaatcatacatattcatcaactaatgagtgt 60294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 29961009 - 29961062
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaatta 226  Q
    ||||||||||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  29961009 atcacggtccatttagaaagaatagtccaatcacacatattcatcaactaatta 29961062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 30010214 - 30010267
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaatta 226  Q
    ||||||||||||| ||| | ||||||||||||| ||||||||||||||||||||    
T  30010214 atcacggtccatttagaaagaatagtccaatcacacatattcatcaactaatta 30010267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 39039843 - 39039900
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgt 230  Q
    ||||||||||||| ||| | ||||| ||||||| ||||||||||||||||||||||||    
T  39039843 atcacggtccatttagaaagaatagcccaatcacacatattcatcaactaattagtgt 39039900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 11172099 - 11172155
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | |||||| |||||| |||||||||||||||||||||||    
T  11172099 atcacggtccatttagaaagaatagttcaatcacacatattcatcaactaattagtg 11172155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 39032831 - 39032887
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | ||||| ||||||| |||||||||||||||||||||||    
T  39032831 atcacggtccatttagaaagaatagcccaatcacacatattcatcaactaattagtg 39032887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 41273018 - 41272949
Alignment:
Q  172 tatcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||| |||||||| ||| | |||||  ||||||||||||||||||||||||||||||  |||||||||||    
T  41273018 tatcatggtccatttagaaagaatagcacaatcatacatattcatcaactaattagtg-cttaacacaata 41272949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 3469904 - 3469836
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| ||| | ||||| ||||||| ||||||||||||| |||||||||  |||||||||||    
T  3469904 atcacggtccatttagaaagaatagcccaatcacacatattcatcaattaattagtg-cttaacacaata 3469836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 38445774 - 38445645
Alignment:
Q  97 tgatgagataacttttaaatagctaaacaattgacgattgagacttctcattggacctaactaaatgagtcaagatatcacggtccattcagagacaata 196  Q
    ||||||||| || ||||||||||||||| |  || |   ||||| ||| ||||||| || |||||||  ||||   |||||||| |||| ||| | ||||    
T  38445774 tgatgagatgacgtttaaatagctaaacgaccgagggcagagacctctaattggacttagctaaatggttcaacccatcacggttcatttagaaaaaata 38445675  T
Q  197 gtccaatcatacatattcatcaactaatta 226  Q
    || |||||| ||||||||||||||||||||    
T  38445674 gttcaatcacacatattcatcaactaatta 38445645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 32280860 - 32280916
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | ||||||| ||||| |||| ||||||||||||||||||    
T  32280860 atcacggtccatttagaaagaatagtcaaatcacacatgttcatcaactaattagtg 32280916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 50158227 - 50158171
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | |||||  ||||||||||||||||||||||||| ||||    
T  50158227 atcacggtccatttagaaataatagcacaatcatacatattcatcaactaatgagtg 50158171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 31112432 - 31112377
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagt 228  Q
    ||||||||||||| ||| | ||||| ||||||| || |||||||||||||||||||    
T  31112432 atcacggtccatttagaaagaatagcccaatcacacttattcatcaactaattagt 31112377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 10626377 - 10626445
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| ||| | ||||| ||||||| |||||| |||| |||||||||||  |||||||||||    
T  10626377 atcacggtccatttagaaagaatagcccaatcacacatatccatctactaattagtg-cttaacacaata 10626445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 19240602 - 19240670
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| ||| | ||||   |||||| |||||||||||||||||||||||  |||||||||||    
T  19240602 atcacggtccatttagaaagaatatctcaatcacacatattcatcaactaattagtg-cttaacacaata 19240670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 32285831 - 32285874
Alignment:
Q  200 caatcatacatattcatcaactaattagtgtattaacacaataaa 244  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||    
T  32285831 caatcacacatattcatcaactaattagtgt-ttaacagaataaa 32285874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1634 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1634
Description:

Target: scaffold1634; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 115 - 171
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    |||||| |||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  115 atcacgatccatttagaaagaatagtccaatcatacatattcatcaactaatgagtg 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 23848656 - 23848712
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | ||||||||||||| ||||||||||||| |||||||||    
T  23848656 atcacggtccatttagaaagaatagtccaatcacacatattcatcaattaattagtg 23848712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 9972826 - 9972775
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaat 224  Q
    ||||||||||||| ||  | ||||| ||||||||||||||||||||||||||    
T  9972826 atcacggtccatttagttagaatagcccaatcatacatattcatcaactaat 9972775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 15121637 - 15121678
Alignment:
Q  200 caatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  15121637 caatcacacatattcatcaactaattagt-tattaacacaata 15121678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 18338165 - 18338097
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    ||||||||||||| ||| | |||||  |||||| |||||||||| ||||||||||||  |||||||||||    
T  18338165 atcacggtccatttagaaagaatagatcaatcacacatattcataaactaattagtg-cttaacacaata 18338097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 18891192 - 18891248
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||| ||||||||| | | |||||||||||||||||||||||||||||||| ||||    
T  18891192 atcacagtccattcaaaaagaatagtccaatcatacatattcatcaactaatgagtg 18891248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 36048942 - 36048876
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaa 240  Q
    ||||||||||||| ||| | ||||| ||||||| |||||||||||| ||||||||||| |||||||||    
T  36048942 atcacggtccatttagaaagaatagcccaatcacacatattcatcatctaattagtgt-ttaacacaa 36048876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 35905039 - 35905144
Alignment:
Q  136 gagacttctcattggacctaactaaatgagtcaagatatcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaa 235  Q
    ||||| ||||||||| | || |||||||  ||||   ||||||||||||| ||| | |||||| ||||||  ||||||||||||||||||||||  ||||    
T  35905039 gagacctctcattgggcttagctaaatggttcaacccatcacggtccatttagaaagaatagttcaatcacccatattcatcaactaattagtg-cttaa 35905137  T
Q  236 cacaata 242  Q
    |||||||    
T  35905138 cacaata 35905144  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 2228909 - 2228853
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | |||||  |||||| |||||||||||||||||||||||    
T  2228909 atcacggtccatttagaaagaatagctcaatcacacatattcatcaactaattagtg 2228853  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 6262257 - 6262189
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtgtattaacacaata 242  Q
    |||||| |||||| ||| | ||||||||||||| |||||||| |||| |||||||||  |||||||||||    
T  6262257 atcacgatccatttagaaagaatagtccaatcacacatattcgtcaattaattagtg-cttaacacaata 6262189  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 42567733 - 42567786
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaatta 226  Q
    ||||||||||||| | | | ||||| ||||||| ||||||||||||||||||||    
T  42567733 atcacggtccatttaaaaagaatagcccaatcagacatattcatcaactaatta 42567786  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 33361691 - 33361635
Alignment:
Q  173 atcacggtccattcagagacaatagtccaatcatacatattcatcaactaattagtg 229  Q
    ||||||||||||| ||| | ||||  ||||||||||||||| |||||||||| ||||    
T  33361691 atcacggtccatttagaaagaataacccaatcatacatatttatcaactaatgagtg 33361635  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 134572 - 134692
Alignment:
Q  110 tttaaatagctaaacaattgacgattgagacttctcattggacctaactaaatgagtcaagatatcacggtccattcagagacaatagtccaatcataca 209  Q
    ||||||||||||||| | ||| | | | ||| ||||||||| | || |||||||  ||||   ||||||||||||| ||  |||||||||||||||  |     
T  134572 tttaaatagctaaacgactgaggctagggacctctcattgggcttatctaaatggttcaacccatcacggtccatttagtaacaatagtccaatcactcg 134671  T
Q  210 tattcatcaactaattagtgt 230  Q
    ||||||||||||||| |||||    
T  134672 tattcatcaactaatcagtgt 134692  T

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