View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766_high_20 (Length: 235)
Name: NF4766_high_20
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 40944231 - 40944013
Alignment:
| Q |
1 |
agtgacgttgttgttaaggagatttgtgatggcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcatggca |
100 |
Q |
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| T |
40944231 |
agtgacgttgttgttaaggagattggtgatggcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcatggca |
40944132 |
T |
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| Q |
101 |
gctcttgttgctgtgtgtggaagtgtgtggcttgactcagttccgtttccaaatattccagcattcaaaaatctgtaaaacaagcagaataagcatcaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40944131 |
gctcttgttgctgtgtgtggaagtgtgtggcttgactcacttccttttccaaatattccagcattcaaaaatctgaaaaacaagcagaataagcatcaga |
40944032 |
T |
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| Q |
201 |
accatatattttcttctgt |
219 |
Q |
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||||| ||||||||||||| |
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| T |
40944031 |
accatttattttcttctgt |
40944013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 40958196 - 40958013
Alignment:
| Q |
1 |
agtgacgttgttgttaaggagatttgtgatggcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcatggca |
100 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40958196 |
agtgacgttgttgttaaggagcttagtgatggcttccaagatttcaaatctaattcctgaatagccttggaggagtgtgttgattctcactagcatggct |
40958097 |
T |
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| Q |
101 |
gctcttgttgctgtgtgtggaagtgtgtggcttgactcagttccgtttccaaatattccagcattcaaaaatctgtaaaacaag |
184 |
Q |
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| T |
40958096 |
gctcttgttgccgtgtgtggtagtgtgtgatttgactctgttccatttccgaatattcctgcattcaaaaacctggaaaacaag |
40958013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 28185195 - 28185358
Alignment:
| Q |
8 |
ttgttgttaaggagatttgtgatggcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcatggcagctcttg |
107 |
Q |
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|||||||| | ||| |||||||| |||||||||||||||||||| || || ||||| ||||| || || |||||||| ||||| ||||| |||||||||| |
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| T |
28185195 |
ttgttgttcaagagctttgtgatagcttccaagatttcaaatctaataccagaatacccttgaagaagagtgttgatcctcacaagcattgcagctcttg |
28185294 |
T |
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| Q |
108 |
ttgctgtgtgtggaagtgtgtggcttgactcagttccgtttccaaatattccagcattcaaaaa |
171 |
Q |
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| T |
28185295 |
ttgctgtatgtggtagtgtacaatttgattctgtaccattgccaaatattccggcattcaaaaa |
28185358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 42610605 - 42610688
Alignment:
| Q |
32 |
gcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcatggcagctcttgttgctgtg |
115 |
Q |
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||||||| |||||||||||||||||||||||| ||||| || | |||||||||||| || | |||| | |||||||| |||||| |
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| T |
42610605 |
gcttccatgatttcaaatctgattcctgaatatccttgaagcaatgtgttgattctaaccaacatgcctgctcttgtggctgtg |
42610688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 40548923 - 40548770
Alignment:
| Q |
23 |
tttgtgatggcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcatggcagctcttgttgctgtgtgtggaa |
122 |
Q |
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||||| |||||||| | |||||| ||||||||||||| || ||||| ||||||||||||||||| |||| ||| |||||||||||||| | ||||| | |
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| T |
40548923 |
tttgtaatggcttctagcatttcatatctgattcctgagtagccttgaaggagtgtgttgattcttactaacattgcagctcttgttgcattttgtggca |
40548824 |
T |
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| Q |
123 |
gtgtgtggcttgactcagttccgtttccaaatattccagcattcaaaaatctgt |
176 |
Q |
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||| |||| | || ||||| || ||||| ||||||||||||||||| |||| |
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| T |
40548823 |
atgtatggcattgttctgttccattaccaaaaattccagcattcaaaaacctgt |
40548770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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