View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766_high_5 (Length: 411)
Name: NF4766_high_5
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_high_5 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 14510515 - 14510312
Alignment:
| Q |
42 |
cctatctgacaataattgtcacatttcatccccatacaactttagtgtttgtcattgtgttcgtagttaatagagtcacnnnnnnnttattcaatcgaac |
141 |
Q |
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| T |
14510515 |
cctatttgacaataattgtcacatttcatccccatacaactttagtgtttgtcattgtgttcgtagttaatagagtcacaaaaaaattattcaatcgaac |
14510416 |
T |
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| Q |
142 |
ccaaatcacttgatttaataattccatttataaactctttatcgtcattaagtaatcccaatgcataacatgtttccagaaggtgtcatatgtatgacca |
241 |
Q |
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| T |
14510415 |
ccaaatcacttgatttaataattccatttataaactctttatcgt-attaagtaatcccaatgcataatatgtttccagaaggtgtcatatgtatgacca |
14510317 |
T |
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| Q |
242 |
tcaac |
246 |
Q |
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| T |
14510316 |
tcaac |
14510312 |
T |
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Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 326 - 401
Target Start/End: Complemental strand, 14510189 - 14510114
Alignment:
| Q |
326 |
tttacatggatgccatcatatattgttcttcacatatataaaactcgttagaaattcagcatatatcaggtctctg |
401 |
Q |
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| T |
14510189 |
tttacatggatgccatcatgtattgttcttcacatatataaaactcgttagaaattcagcatatatcaggtctctg |
14510114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 5465036 - 5464991
Alignment:
| Q |
136 |
tcgaacccaaatcacttgatttaataattccatttataaactcttt |
181 |
Q |
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| T |
5465036 |
tcgaatccaaatcacttgattttgtaattccatctataaactcttt |
5464991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 17611 - 17719
Alignment:
| Q |
139 |
aacccaaatcacttgatttaataattccatttataaactctttatcgtcattaagtaatcccaatgcataacatg-tttccagaaggtgtcatatgtatg |
237 |
Q |
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| T |
17611 |
aacccaaaacatttgattttgtaattcaatatataaactctttaccatcatcaagtaatctcaaagcataatatgttttcgggaaggtgtaatatgtagg |
17710 |
T |
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| Q |
238 |
accatcaac |
246 |
Q |
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| T |
17711 |
accgtcaac |
17719 |
T |
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