View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766_high_8 (Length: 381)
Name: NF4766_high_8
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 6 - 381
Target Start/End: Complemental strand, 48661427 - 48661052
Alignment:
| Q |
6 |
ccacttacaagtcactgcatgcatacctttccattcatctcttttgcagctgattgtgcagaatcttcctcgacaaaccaaatatatgcaaatcccagag |
105 |
Q |
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| T |
48661427 |
ccacttacaagtcactgcatgcatacctttccattcatctcttttgcagctgattgtgcagaatcttcctcgacaaaccaaatatatgcaaatcctagag |
48661328 |
T |
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| Q |
106 |
cctgcccagnnnnnnnatctatcaaaagcttgactgtcatgaaataaagcaatacaaattgaagatccttagagactcaagatttccaaaacttgaagtt |
205 |
Q |
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| T |
48661327 |
actgcccagtttttttatctatcaaaagcttgactgtcatgaaataaagaaatacaaattgaagatccttagagactcaagatttccaaaacttgaagtt |
48661228 |
T |
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| Q |
206 |
ccattaattcaaaataaatatgatctagaaagtacctctctgaaaacacccaaaatatatttataattaatcaccttgagtaacttcaccgaacattgaa |
305 |
Q |
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| T |
48661227 |
ccattaattcaaaataaatatgatctagaaagtacctctctgaaaacacccaaaatatatttataattaattaccttgagtaacttcaccgaacattgaa |
48661128 |
T |
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| Q |
306 |
aacactttagttaaatgcaattcagtggttgaaagaggaagccctgcattggccaaccatgaagacttcagtacaa |
381 |
Q |
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| T |
48661127 |
aacactttagttaaatgcaattcagtggttgaaagaggaagccctgcattggccaaccatgaagacttcagtacaa |
48661052 |
T |
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