View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766_low_10 (Length: 346)
Name: NF4766_low_10
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 23031188 - 23030878
Alignment:
| Q |
18 |
gaatgaagaacaaggccaactaaatcgtcgacccattgataattactaaatgcatggtggccacattcgtgtgcaatgacccaaactccggttagaatgc |
117 |
Q |
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| T |
23031188 |
gaatgaaggacaaggccaactaaatcgtcgacccattgataattactaaatgcatgatggccacattcatgtgcaatgacccaaactccggttagaatgc |
23031089 |
T |
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| Q |
118 |
atccttggatgacccaataaacggcccacgccaaaaatgagaggttatgtggaagggtaggaaaataatttgtggctatgtagacaaggattgatgctat |
217 |
Q |
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| T |
23031088 |
atccttggatggcccaataaacgggccacgccaaaaatgagaggttatgtggaagggtaggaaagtaatttgtggctatataggcaaggattgatgctat |
23030989 |
T |
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| Q |
218 |
ggtaaggtcaacaatgacataggaaaatgatctaatcagtgaacggttaaaacaatgtggtggaattgctttcttgacttcaccaagagtgaatggtggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23030988 |
ggtaaggtcaacaatgacataggaaaatgatctaatcaatgaacggtgaaaacaatgtggtggaattgctttcttgacttcaccaagagtgaatggtggt |
23030889 |
T |
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| Q |
318 |
tttgtagttgg |
328 |
Q |
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||||||||||| |
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| T |
23030888 |
tttgtagttgg |
23030878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 50593934 - 50593858
Alignment:
| Q |
50 |
ccattgataattactaaatgcatggtggccacattcgtgtgcaatgacccaaactccggttagaatgcatccttgga |
126 |
Q |
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| T |
50593934 |
ccattggtagttactaaatgcatggtgaccacattcatgagctatcacccaaacaccggtgagaatgcaaccttgga |
50593858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 37020015 - 37019912
Alignment:
| Q |
24 |
agaacaaggccaactaaatcgtcgacccattgataattactaaatgcatggtggccacattcgtgtgcaatgacccaaactccggttagaatgcatcctt |
123 |
Q |
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|||| |||||||||| ||| || | ||||||||| | ||| ||||||||||||||||| || ||||||||||||||||| ||||| || ||||| |||| |
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| T |
37020015 |
agaataaggccaactgtatcatcaagccattgatagtcactgaatgcatggtggccacactcatgtgcaatgacccaaacaccggtaaggatgcaacctt |
37019916 |
T |
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| Q |
124 |
ggat |
127 |
Q |
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|||| |
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| T |
37019915 |
ggat |
37019912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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