View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4766_low_16 (Length: 265)
Name: NF4766_low_16
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 44309318 - 44309090
Alignment:
| Q |
24 |
aattcaacaacaccgatggccacctctgccatatttgaaaaagttgaaacacatgaatgaagagaagaacaataacccttatcgtcttggcttcccatat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
44309318 |
aattcaacaacaccgatggccacctctgccatatttgaaaaagttgaaacacatgaatgaagagaaaaacaataacccttatggtcttagcttcccatat |
44309219 |
T |
|
| Q |
124 |
ttgaaaattgctacaaagctgatccaacttcaatatcgaaatcaaatcctg----nnnnnnnntcaaattgtgtttaccctttcaaaatttaat-aaaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
44309218 |
ttgaaaattgctacaaagctgatccaacttcaatatcgaaatcaaatcctgaaaaaaaaaaaatcaaattgtttttaccctttcaaaatttaataaaaaa |
44309119 |
T |
|
| Q |
219 |
atcaaaggaagtgaaatgggtttgtgggt |
247 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
44309118 |
atcgaaggaagtgaaatgggtttgtgggt |
44309090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 8673843 - 8674071
Alignment:
| Q |
24 |
aattcaacaacaccgatggccacctctgccatatttgaaaaagttgaaacacatgaatgaagagaagaacaataacccttatcgtcttggcttcccatat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8673843 |
aattcaacaacaccgatggccacctctgccatatttgaaaaagttgaaacacttgaatgaagagaaaaacaataacccttatcgtcttggcttcccatat |
8673942 |
T |
|
| Q |
124 |
ttgaaaattgctacaaagctgatccaacttcaatatcgaaatcaaatcctg----nnnnnnnntcaaattgtgtttaccctttcaaaatttaat-aaaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
8673943 |
ttgaaaattgctacaaagctgatccaacttcaatatccaaatcaaatcctgaaaaaaaaaaaatcaaattgtttttaccctttcaaaatttaataaaaaa |
8674042 |
T |
|
| Q |
219 |
atcaaaggaagtgaaatgggtttgtgggt |
247 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
8674043 |
atcgaaggaagtgaaatgggtttgtgggt |
8674071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 44193779 - 44193688
Alignment:
| Q |
65 |
agttgaaacacatgaatgaagagaagaacaataacccttatcgtcttggcttcccatatttgaaaattgctacaaagctgatccaacttcaa |
156 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
44193779 |
agttgaaacgcatgaatgaagagaagaacaataacccttaccgttttggcttcccatatttgagaattgctacaaagctcttccaacttcaa |
44193688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University