View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766_low_18 (Length: 248)
Name: NF4766_low_18
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8878834 - 8878588
Alignment:
| Q |
1 |
tccaatgtatttgtatgcttaaaatttggtttacattactgcatgcaattgtcattgatgtt-----------taagtggaacagtccaaaaagggatta |
89 |
Q |
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| T |
8878834 |
tccaatgtatttgtaggcttaaaatttggtttacattactgcatgcaattgtcattgatgttccataacgtggtaagtggaacagtccaaaaagggatta |
8878735 |
T |
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| Q |
90 |
aaagcgttacgcgtatcatgtgaaggaacaagctatgcatataaaaaagcaggtaaaccatttttggttcaggttcagcat--tcaaagcaagagtggct |
187 |
Q |
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| T |
8878734 |
aaagcgt-------agcatgtgaaggaacaagctatgcatataaaaaagcaggtaaaccatttttggttcaggttcagcatattcaaagcaagagtggct |
8878642 |
T |
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| Q |
188 |
aaggtttcgtgtaggacataaaccattctcactcccagaaacttacagtattat |
241 |
Q |
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| T |
8878641 |
aaggtttcgtgtaggacataaaccattctcactcccagaaacttacagtattat |
8878588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 8862894 - 8862973
Alignment:
| Q |
63 |
taagtggaacagtccaaaaagggattaaaagcgttacgcgtatcatgtgaaggaacaagctatgcatataaaaaagcaggtaaacca |
149 |
Q |
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| T |
8862894 |
taagtggaacagtccaaaaagggcttaaaagcgtggc-------atgtgaaggaacaagccatgcatatcaaaaagcagataaacca |
8862973 |
T |
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