View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766_low_20 (Length: 237)
Name: NF4766_low_20
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8879046 - 8879267
Alignment:
| Q |
1 |
acaattattttgtatataaatgctcaaatgcagaaatatacaaccgatgatacatatataaaattg--agtcccaatcccaaacaaacaacaagtcattt |
98 |
Q |
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| T |
8879046 |
acaattattttgtatataaatgctcaaatgcagaaatatacaaccgatgatacatatataaaattgtgagtcccaatcccaaacaaacaacaagtcattt |
8879145 |
T |
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| Q |
99 |
gcacaatttgaacctaatccagtgttgattatttatgaatatataacttatataagaaccattgaacacctgaatattattacatataattaccaagaaa |
198 |
Q |
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| T |
8879146 |
gcacaatttgaacctaatccagtgttgattatttatgaatat--aacttatataagaaccattgaacacctgaatattattacatataattaccaagaaa |
8879243 |
T |
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| Q |
199 |
gtaaaccaaaccaatgtaatttct |
222 |
Q |
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| T |
8879244 |
gtaaaccaaaccaatgtaatttct |
8879267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 8882971 - 8883027
Alignment:
| Q |
85 |
acaacaagtcatttgcacaatttgaacctaatccagtgttgattatttatgaatata |
141 |
Q |
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||||||||| ||||||||||| || | |||||||||||||| ||||||||||||||| |
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| T |
8882971 |
acaacaagttatttgcacaatatgtatctaatccagtgttgcttatttatgaatata |
8883027 |
T |
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