View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766_low_23 (Length: 224)
Name: NF4766_low_23
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 8673904 - 8674071
Alignment:
| Q |
44 |
gagaagaacaataacccttatcgtcttggcttcccatatttgaaaattgctacaaagctgatccaacttcaatatcgaaatcaaatcctg----nnnnnn |
139 |
Q |
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| T |
8673904 |
gagaaaaacaataacccttatcgtcttggcttcccatatttgaaaattgctacaaagctgatccaacttcaatatccaaatcaaatcctgaaaaaaaaaa |
8674003 |
T |
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| Q |
140 |
nntcaaattgtgtttaccctttcaaaatttaat-aaaaaatcaaaggaagtgaaatgggtttgtgggt |
206 |
Q |
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| T |
8674004 |
aatcaaattgtttttaccctttcaaaatttaataaaaaaatcgaaggaagtgaaatgggtttgtgggt |
8674071 |
T |
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Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 44309257 - 44309090
Alignment:
| Q |
44 |
gagaagaacaataacccttatcgtcttggcttcccatatttgaaaattgctacaaagctgatccaacttcaatatcgaaatcaaatcctg----nnnnnn |
139 |
Q |
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| T |
44309257 |
gagaaaaacaataacccttatggtcttagcttcccatatttgaaaattgctacaaagctgatccaacttcaatatcgaaatcaaatcctgaaaaaaaaaa |
44309158 |
T |
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| Q |
140 |
nntcaaattgtgtttaccctttcaaaatttaat-aaaaaatcaaaggaagtgaaatgggtttgtgggt |
206 |
Q |
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| T |
44309157 |
aatcaaattgtttttaccctttcaaaatttaataaaaaaatcgaaggaagtgaaatgggtttgtgggt |
44309090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 44193759 - 44193688
Alignment:
| Q |
44 |
gagaagaacaataacccttatcgtcttggcttcccatatttgaaaattgctacaaagctgatccaacttcaa |
115 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
44193759 |
gagaagaacaataacccttaccgttttggcttcccatatttgagaattgctacaaagctcttccaacttcaa |
44193688 |
T |
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