View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766_low_3 (Length: 428)
Name: NF4766_low_3
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_low_3 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Complemental strand, 25507956 - 25507559
Alignment:
| Q |
13 |
aatggatcagtggaaacatggctaaaataaagatataaaattgctatcatgaagatggttaaatatcatattacatggttcatctataccttcgatcgat |
112 |
Q |
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| T |
25507956 |
aatggatcagtggaaacatggctaaaataaagatataaaattgctatcatgaagatggttaaatatcatattacatggttcatctataccttcgatcgat |
25507857 |
T |
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| Q |
113 |
ggttattaaatccaatggaatcacttcttagtactttgaagatcttaatagcttctgagccaaatcaaagctaggcatatgatcttcaatactttatcca |
212 |
Q |
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| T |
25507856 |
ggttattaaatccaatggaatcacttctttgtactttgaagatcttaatagcttctgagtcaaatcaaatctaggcatgtgatcttcaatactttatcca |
25507757 |
T |
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| Q |
213 |
aaagattgtcttgatatttgaatatatcaatcacccatatgatcatcaagttcaaacgatggcttgaatgacttggcacaaatgatgtgtttcttgacaa |
312 |
Q |
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| T |
25507756 |
aaagattgtcttgatatttgaatatatcaatcacccagatgatcatcaagttcaaacgatggcttgaatgacttggcacaaatgatgtatttcttgacaa |
25507657 |
T |
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| Q |
313 |
tgttttgattgaagaatttgcttgcttgataaaatcttgatccagttgtcttggttttttatgactattgtcgtttcctcaaagatcgtttgtatatctt |
412 |
Q |
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| T |
25507656 |
tgttttgattgaagaatttgcttgcttgataaaatcttgatccaattgtctt-gttttttatgactattgtcgtttcctcaaagatcg-ttgtatatctt |
25507559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 242
Target Start/End: Complemental strand, 4388317 - 4388218
Alignment:
| Q |
143 |
gtactttgaagatcttaatagcttctgagccaaatcaaagctaggcatatgatcttcaatactttatccaaaagattgtcttgatatttgaatatatcaa |
242 |
Q |
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| T |
4388317 |
gtactttgaagatcttaagtgatttcgagccaaatcagagctaggcacgtgattttaaatactttatccaaatgattgtcttcacatttgaatatatcaa |
4388218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 13335321 - 13335229
Alignment:
| Q |
42 |
aagatataaaattgctatcatgaagatggttaaatatcatattacatgg-ttcatctataccttcgatcgatggttattaaatccaatggaat |
133 |
Q |
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| T |
13335321 |
aagaaataaaattgctatcttggagatggttaaatagcagattacatggattcatttacacttgcaatcaatggttattaaatccaatggaat |
13335229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 10497455 - 10497368
Alignment:
| Q |
47 |
ataaaattgctatcatgaagatggttaaatatcatattacatgg-ttcatctataccttcgatcgatggttattaaatccaatggaat |
133 |
Q |
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| T |
10497455 |
ataaaattgctatcttggagatcgttaaatagcagattacatggattcatttacacttgcaatcaatggttattatatccaatggaat |
10497368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 18336 - 18263
Alignment:
| Q |
130 |
gaatcacttcttagtactttgaagatcttaatagcttctgagccaaatcaaagctaggcatatgatcttcaata |
203 |
Q |
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|||||| ||||| ||||||||||||||||||||||||| ||| ||||| ||| | | || ||||||||||||| |
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| T |
18336 |
gaatcatttctttgtactttgaagatcttaatagcttccgagtcaaataaaatatggccacatgatcttcaata |
18263 |
T |
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