View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766_low_6 (Length: 402)
Name: NF4766_low_6
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766_low_6 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 9570571 - 9570188
Alignment:
| Q |
19 |
aataaatgtgggtacctctcccaaccgggattcaaacaatggttcaccacattgtggtagtctaggcccttacgttagaggagtcagaccaaacaaaaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9570571 |
aataaatgtgggtacctctcccaaccgggattcaaacaatggttcaccacattgtggtagtctaggcccttacgttagaggagtcagaccaaacaaaaat |
9570472 |
T |
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| Q |
119 |
gaaagacgggcaaattaaggaaacaatgtcttggttgcaaattacattccaccaacttcacaatgtcataagattttggaatttaccgtattaaatatcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9570471 |
gaaagacgggcaaattaaggaaacaatgtcttggttgcaaattacattccaccaacttcacaatgtcataagattttggaatttactgtattaaatatcc |
9570372 |
T |
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| Q |
219 |
accatgtgcagttatcaacaggtatatgaagaagattaactgatttgaactaagccaccaagcttgaacagggcaggtttattattttggtttgggatgc |
318 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||| | |
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| T |
9570371 |
accatgtgcagctatcaacaggtatatgaagaagattaactgattcgaactaagccactaaacttgaacagggcaggtttattattttggtttgggatac |
9570272 |
T |
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| Q |
319 |
aaaagaaaaaataaagcagaaaactaaacatagttgcatgaatattgctggaggtcattcactaaagtcaaaagatcaatattt |
402 |
Q |
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| T |
9570271 |
aaaagaaaaaataaagcagaaaactaaacatagttgcatgaatattgctggaggtcattcactaaagtcaaaagatcaatattt |
9570188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 9605793 - 9605970
Alignment:
| Q |
19 |
aataaatgtggg-tacctctcccaaccgggattcaaacaatggttcaccacattgtggtagtctaggcccttacgttagaggagtcagaccaaacaaaaa |
117 |
Q |
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| T |
9605793 |
aataaatgtggggtagctctcccaaccgggattcaaatcttggttcaccacattgtggtagtctagcatcttgcgttagaggagtcagaccaaacaaaaa |
9605892 |
T |
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| Q |
118 |
tgaaagacgggcaaattaaggaaacaatgtcttggttgcaaattacattccaccaacttcacaatgtcataagatttt |
195 |
Q |
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| T |
9605893 |
tgaaagacaggataattaaggaaacaatgtcttggttgcaaattacattccaccaacttcacaatttcataagatttt |
9605970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 253 - 363
Target Start/End: Original strand, 9581237 - 9581347
Alignment:
| Q |
253 |
attaactgatttgaactaagccaccaagcttgaacagggcaggtttattattttggtttgggatgcaaaagaaaaaataaagcagaaaactaaacatagt |
352 |
Q |
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| T |
9581237 |
attaattgatttgaactaagccaccaagcttgaacaagccaagtttattatttaggtttgggatacaaaagaaaaaataaagcattaaactaaacatggt |
9581336 |
T |
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| Q |
353 |
tgcatgaatat |
363 |
Q |
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| T |
9581337 |
ttcatgaatat |
9581347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 253 - 363
Target Start/End: Original strand, 9586932 - 9587042
Alignment:
| Q |
253 |
attaactgatttgaactaagccaccaagcttgaacagggcaggtttattattttggtttgggatgcaaaagaaaaaataaagcagaaaactaaacatagt |
352 |
Q |
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||||| |||||||||||||||||||||||||||||| | || ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| || |
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| T |
9586932 |
attaattgatttgaactaagccaccaagcttgaacaagccaagtttattatttaggtttgggatacaaaagaaaaaataaagcattaaactaaacatggt |
9587031 |
T |
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| Q |
353 |
tgcatgaatat |
363 |
Q |
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| T |
9587032 |
ttcatgaatat |
9587042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 9580847 - 9580982
Alignment:
| Q |
45 |
gggattcaaacaatggttcaccacattgtggtagtctaggcccttacgt--tagaggagtcagaccaaacaaaaatgaaagacgggcaaattaaggaaac |
142 |
Q |
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|||||||||| |||||| ||||||||||||||||||| |||||| | |||||||||| |||||||||||||| |||||| ||||||||||| ||| |
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| T |
9580847 |
gggattcaaatcttggttcgccacattgtggtagtctagccccttatatggtagaggagtccgaccaaacaaaaataaaagacaagcaaattaaggcaac |
9580946 |
T |
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| Q |
143 |
aatgtcttggttgcaaattacattccaccaacttca |
178 |
Q |
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| T |
9580947 |
aagttcttcgttgctaattacattccaccaacttca |
9580982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 9586542 - 9586677
Alignment:
| Q |
45 |
gggattcaaacaatggttcaccacattgtggtagtctaggcccttacgt--tagaggagtcagaccaaacaaaaatgaaagacgggcaaattaaggaaac |
142 |
Q |
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|||||||||| |||||| ||||||||||||||||||| |||||| | |||||||||| |||||||||||||| |||||| ||||||||||| ||| |
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| T |
9586542 |
gggattcaaatcttggttcgccacattgtggtagtctagccccttatatggtagaggagtccgaccaaacaaaaataaaagacaagcaaattaaggcaac |
9586641 |
T |
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| Q |
143 |
aatgtcttggttgcaaattacattccaccaacttca |
178 |
Q |
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| T |
9586642 |
aagttcttcgttgctaattacattccaccaacttca |
9586677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 9574668 - 9574612
Alignment:
| Q |
163 |
cattccaccaacttcacaatgtcataagattttggaatttaccgtattaaatatccacc |
221 |
Q |
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| T |
9574668 |
cattccacaaacttcacaatgtcataagattttgga--ttactatattaaatatccacc |
9574612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 9602154 - 9602201
Alignment:
| Q |
242 |
atatgaagaagattaactgatttgaactaagccaccaagcttgaacag |
289 |
Q |
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|||||||||||||||| ||||||||||||| | ||||||||||||||| |
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| T |
9602154 |
atatgaagaagattaattgatttgaactaatcaaccaagcttgaacag |
9602201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 27037305 - 27037237
Alignment:
| Q |
21 |
taaatgtgggtacctctcccaaccgggattcaaacaatggttcaccacattgtggtagtctaggccctt |
89 |
Q |
| |
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||||||||||||||||||||| | ||| |||||| |||||| ||||||||||| ||||||| ||||| |
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| T |
27037305 |
taaatgtgggtacctctcccagctaggagtcaaactttggttcgccacattgtgggagtctagcccctt |
27037237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 328
Target Start/End: Complemental strand, 37896276 - 37896189
Alignment:
| Q |
242 |
atatgaagaagattaactgatttgaactaagccaccaagcttgaacagggcaggtttatt-attttggtttgggatgcaaaagaaaaa |
328 |
Q |
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|||||||||| ||||||||||||||||||||||| ||| ||||||| | | |||||| |||| | ||||| |||||||||||||| |
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| T |
37896276 |
atatgaagaatattaactgatttgaactaagccatcaaaattgaacaagcccaatttattaatttagatttggaatgcaaaagaaaaa |
37896189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 348
Target Start/End: Complemental strand, 42447102 - 42446996
Alignment:
| Q |
243 |
tatgaagaagattaactgatttgaactaagccaccaagcttgaacagggcaggtttattattttgg-tttgggatgcaaaagaaaaaataaagcagaaaa |
341 |
Q |
| |
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||||| ||| ||||| |||||||||||||| || |||||||||||| | |||||||| ||||| ||| |||||||||||| |||||||| ||| ||| |
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| T |
42447102 |
tatgacgaatattaattgatttgaactaagtcatcaagcttgaacaagatcagtttattaatttggattttggatgcaaaagacaaaataaaccaggaaa |
42447003 |
T |
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| Q |
342 |
ctaaaca |
348 |
Q |
| |
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|| |||| |
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| T |
42447002 |
ctgaaca |
42446996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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