View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4766_low_7 (Length: 400)

Name: NF4766_low_7
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4766_low_7
NF4766_low_7
[»] chr2 (14 HSPs)
chr2 (19-389)||(6045648-6046010)
chr2 (21-96)||(6041019-6041094)
chr2 (307-356)||(34691817-34691866)
chr2 (307-356)||(34714229-34714278)
chr2 (263-307)||(35056907-35056951)
chr2 (268-307)||(44860359-44860398)
chr2 (24-82)||(6052333-6052391)
chr2 (25-96)||(6037334-6037405)
chr2 (268-307)||(34784963-34785002)
chr2 (258-307)||(28524465-28524514)
chr2 (258-307)||(36096346-36096395)
chr2 (263-307)||(18054779-18054823)
chr2 (307-383)||(23717997-23718073)
chr2 (307-383)||(24105669-24105745)
[»] chr6 (8 HSPs)
chr6 (268-307)||(10294146-10294185)
chr6 (263-307)||(16488566-16488610)
chr6 (307-374)||(30866156-30866223)
chr6 (268-307)||(9195735-9195774)
chr6 (268-307)||(18367875-18367914)
chr6 (321-351)||(13689518-13689548)
chr6 (270-307)||(34384958-34384995)
chr6 (271-307)||(28862161-28862197)
[»] chr5 (10 HSPs)
chr5 (263-307)||(21814300-21814344)
chr5 (258-307)||(6401537-6401586)
chr5 (269-307)||(37328826-37328864)
chr5 (258-307)||(18592112-18592161)
chr5 (307-351)||(3966506-3966550)
chr5 (271-307)||(3966542-3966578)
chr5 (263-307)||(11685978-11686021)
chr5 (263-307)||(21542069-21542113)
chr5 (307-351)||(32766955-32766999)
chr5 (263-303)||(36642738-36642778)
[»] chr1 (7 HSPs)
chr1 (263-307)||(34371752-34371796)
chr1 (268-307)||(44482269-44482308)
chr1 (307-389)||(6427315-6427397)
chr1 (258-307)||(25934655-25934704)
chr1 (319-374)||(9629924-9629979)
chr1 (268-307)||(25361925-25361964)
chr1 (307-351)||(17425105-17425149)
[»] scaffold0036 (1 HSPs)
scaffold0036 (268-307)||(9728-9767)
[»] chr8 (5 HSPs)
chr8 (268-307)||(15816110-15816149)
chr8 (268-307)||(11927067-11927106)
chr8 (268-310)||(22652012-22652054)
chr8 (307-348)||(12606841-12606882)
chr8 (263-307)||(26902151-26902195)
[»] chr4 (12 HSPs)
chr4 (271-309)||(44132628-44132666)
chr4 (269-302)||(5225595-5225628)
chr4 (307-348)||(35952629-35952670)
chr4 (271-351)||(1747215-1747297)
chr4 (258-307)||(5414143-5414192)
chr4 (258-307)||(46083962-46084011)
chr4 (269-309)||(847988-848028)
chr4 (307-351)||(3712521-3712565)
chr4 (272-308)||(4100002-4100038)
chr4 (318-374)||(20521872-20521928)
chr4 (263-307)||(22234866-22234910)
chr4 (263-307)||(30982854-30982898)
[»] scaffold0003 (1 HSPs)
scaffold0003 (263-307)||(241633-241677)
[»] chr7 (3 HSPs)
chr7 (271-307)||(6630896-6630932)
chr7 (277-309)||(19206087-19206119)
chr7 (263-307)||(26329358-26329402)
[»] chr3 (3 HSPs)
chr3 (272-307)||(8039820-8039855)
chr3 (271-309)||(28678340-28678378)
chr3 (258-307)||(11665983-11666032)
[»] scaffold0623 (1 HSPs)
scaffold0623 (258-307)||(5967-6016)
[»] scaffold0316 (1 HSPs)
scaffold0316 (271-300)||(16180-16209)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 6045648 - 6046010
Alignment:
Q  19 caaccgatatcaatatcgagtattttggtaccgatgatcttctccgtcatatcgctgattcgtaagttccactttcttgtgcattttcatgatttaattc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6045648 caaccgatatcaatatcgagtattttggtaccgatgatcttctccgtcatatcgctgattcgtaagttccactttcttgtgcattttcatgatttaattc 6045747  T
Q  119 acattcgtataattcagttgtgtctagggttatgactagttcagtgattgaatctgttatgacagcaggagaatggtagtaggagtgtagttttgaaaaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6045748 acattcgtataattcagttgtgtctagggttatgactagttcagtgattgaatctgttatgacaacaggagaatggtagtaggagtgtagttttgaaaaa 6045847  T
Q  219 tgcttggaaattataattacgaagctcaacaatgtcatttcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataattatataattacgt 318  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||        |||||| ||| |    
T  6045848 tgcttggaaattataattacgaagctcaacaatgtcatttcaatcacgggtcgtgtccgacaccaacaccacaccgacac--------atataactactt 6045939  T
Q  319 tgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtcctctccgtgcttcat 389  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6045940 tgaattgtatgattttatcaaattattagcggtatgggcttgtcggtgtccgtgtcctctccgtgcttcat 6046010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 6041019 - 6041094
Alignment:
Q  21 accgatatcaatatcgagtattttggtaccgatgatcttctccgtcatatcgctgattcgtaagttccactttctt 96  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| | ||||||    
T  6041019 accgatatcaatatcgagtattttggtaccgacgatcttctccgtcatattgctaattcgtaagttctattttctt 6041094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 34691817 - 34691866
Alignment:
Q  307 atataattacgttgaattgtatgattttatcaaattattagcggtatggg 356  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  34691817 atataattacactgaattatatgattttatcaaattattagcggtatggg 34691866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 34714229 - 34714278
Alignment:
Q  307 atataattacgttgaattgtatgattttatcaaattattagcggtatggg 356  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  34714229 atataattacactgaattatatgattttatcaaattattagcggtatggg 34714278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 35056951 - 35056907
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||    
T  35056951 cacgtgtcgtgtccgacaccgacacgacaccgacacatataatta 35056907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 44860398 - 44860359
Alignment:
Q  268 gtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  44860398 gtcgtgtccaacaccaacacgacaccgacacatataatta 44860359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 6052333 - 6052391
Alignment:
Q  24 gatatcaatatcgagtattttggtaccgatgatcttctccgtcatatcgctgattcgta 82  Q
    |||||||| ||||||||||||||||| |||||||||||||  | ||||||| |||||||    
T  6052333 gatatcaacatcgagtattttggtactgatgatcttctccaccgtatcgctaattcgta 6052391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 6037334 - 6037405
Alignment:
Q  25 atatcaatatcgagtattttggtaccgatgatcttctccgtcatatcgctgattcgtaagttccactttctt 96  Q
    ||||||| ||| | |||||| ||||| ||||||||||||| || |||||||||  ||| |||||||||||||    
T  6037334 atatcaacatcaactatttttgtaccaatgatcttctccgccacatcgctgataagtatgttccactttctt 6037405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 34784963 - 34785002
Alignment:
Q  268 gtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  34784963 gtcgtgtccgataccgacacgacaccgacacatataatta 34785002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 28524514 - 28524465
Alignment:
Q  258 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||| || ||||||||||||||||| ||| |||||||||||||||    
T  28524514 tcagacacgtgttgtgtccgacaccaacacaacaacgacacatataatta 28524465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 36096346 - 36096395
Alignment:
Q  258 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||| ||||||||||||| | |||||||||||||| |||||||||    
T  36096346 tcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataatta 36096395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 18054779 - 18054823
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| ||||||| ||||||| |||||||||| |||||||||||||    
T  18054779 cacgcgtcgtgttcgacaccgacacgacaccaacacatataatta 18054823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 23718073 - 23717997
Alignment:
Q  307 atataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtcctctccgtg 383  Q
    ||||||||||  |||||| | ||| ||| |||||||||||||||| | ||| |||| ||||||||||| | ||||||    
T  23718073 atataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccgtg 23717997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 24105745 - 24105669
Alignment:
Q  307 atataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtcctctccgtg 383  Q
    ||||||||||  |||||| | ||| ||| |||||||||||||||| | ||| |||| ||||||||||| | ||||||    
T  24105745 atataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccgtg 24105669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 10294185 - 10294146
Alignment:
Q  268 gtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10294185 gtcgtgtccgacaccaacacgacaccgacacatataatta 10294146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 16488566 - 16488610
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||    
T  16488566 cacgtgtcgtgtccgacaccgacacgacaccgacacatataatta 16488610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 374
Target Start/End: Original strand, 30866156 - 30866223
Alignment:
Q  307 atataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtc 374  Q
    |||||||||| ||||||| | ||||||| |||||||||||||||| | ||| |||||||||| |||||    
T  30866156 atataattacattgaattatgtgattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtc 30866223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 9195735 - 9195774
Alignment:
Q  268 gtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  9195735 gtcgtgtcagacacctacacgacaccgacacatataatta 9195774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 18367914 - 18367875
Alignment:
Q  268 gtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  18367914 gtcgtgtctgacaccgacacgacaccgacacatataatta 18367875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 351
Target Start/End: Original strand, 13689518 - 13689548
Alignment:
Q  321 aattgtatgattttatcaaattattagcggt 351  Q
    |||||||||||||||||||||||||||||||    
T  13689518 aattgtatgattttatcaaattattagcggt 13689548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 34384958 - 34384995
Alignment:
Q  270 cgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  34384958 cgtgtctgacaccaacacgaaaccgacacatataatta 34384995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 28862197 - 28862161
Alignment:
Q  271 gtgtccgacaccaacacgacaccgacacatataatta 307  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  28862197 gtgtcagacaccaacacgacaccgacacatatgatta 28862161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 21814344 - 21814300
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||    
T  21814344 cacgtgtcgtgtccgacaccgacacgacaccgacacatataatta 21814300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 6401586 - 6401537
Alignment:
Q  258 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||| ||||||||||||||  ||||||||||||||||||||||||    
T  6401586 tcagacacgtgtcgtgtccgacactgacacgacaccgacacatataatta 6401537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 37328826 - 37328864
Alignment:
Q  269 tcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  37328826 tcgtgtccgacaccgacacgacaccgacacatgtaatta 37328864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 18592161 - 18592112
Alignment:
Q  258 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||| || |||||||||||| ||||||||||| ||||||||||||    
T  18592161 tcagacacgtgttgtgtccgacaccgacacgacaccggcacatataatta 18592112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 3966550 - 3966506
Alignment:
Q  307 atataattacgttgaattgtatgattttatcaaattattagcggt 351  Q
    ||||||||||  |||||||| ||||||| ||||||||||||||||    
T  3966550 atataattacactgaattgtgtgattttctcaaattattagcggt 3966506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 3966578 - 3966542
Alignment:
Q  271 gtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||||||||||  ||||||||||||||||||||||||    
T  3966578 gtgtccgacactgacacgacaccgacacatataatta 3966542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 11686021 - 11685978
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||    
T  11686021 cacgtgtcgtgtccgacaccga-acgacaccgacacatataatta 11685978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 21542113 - 21542069
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| ||||||||||||||| ||||||||||||||| | ||||||    
T  21542113 cacgtgtcgtgtccgacaccgacacgacaccgacacttgtaatta 21542069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 32766955 - 32766999
Alignment:
Q  307 atataattacgttgaattgtatgattttatcaaattattagcggt 351  Q
    |||||||||| |||||||||  |||||| ||||||||||||||||    
T  32766955 atataattacattgaattgtgcgattttctcaaattattagcggt 32766999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 36642738 - 36642778
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatata 303  Q
    |||| ||||||||||||||||||| ||||||||||| ||||    
T  36642738 cacgtgtcgtgtccgacaccaacatgacaccgacacttata 36642778  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 34371796 - 34371752
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  34371796 cacgtgtcgtatccgacaccaacacgacaccgacacatataatta 34371752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 44482308 - 44482269
Alignment:
Q  268 gtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  44482308 gtcgtgtccgacaccgacacgacaccgacacatataatta 44482269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 389
Target Start/End: Complemental strand, 6427397 - 6427315
Alignment:
Q  307 atataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtcctctccgtgcttcat 389  Q
    |||||||||| ||||||| | ||||||| |||||||||||||||| | ||  |||| ||||||||| | | ||||||||||||    
T  6427397 atataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccgtgccgtgtccgtgcttcat 6427315  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 25934704 - 25934655
Alignment:
Q  258 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||| ||||||||||||||| |||||| |||||||||||||||||    
T  25934704 tcagacacgtgtcgtgtccgacaccgacacgataccgacacatataatta 25934655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 9629924 - 9629979
Alignment:
Q  319 tgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtc 374  Q
    |||||| |||||||||||||||||||||||||| | | | ||||||||||| ||||    
T  9629924 tgaattatatgattttatcaaattattagcggtgtcgatgtgtcggtgtccatgtc 9629979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 25361964 - 25361925
Alignment:
Q  268 gtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  25361964 gtcgtgtccgacaccgacacgacactgacacatataatta 25361925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 17425105 - 17425149
Alignment:
Q  307 atataattacgttgaattgtatgattttatcaaattattagcggt 351  Q
    |||||||||| ||||||| | ||||||||||||||||||| ||||    
T  17425105 atataattacattgaattatgtgattttatcaaattattatcggt 17425149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 9728 - 9767
Alignment:
Q  268 gtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  9728 gtcgtgtctgacaccaacacgacaccgacacatataatta 9767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 15816110 - 15816149
Alignment:
Q  268 gtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  15816110 gtcgtgtccgacaccaacacgacaccgacacttataatta 15816149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 11927067 - 11927106
Alignment:
Q  268 gtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  11927067 gtcgtgtatgacaccaacacgacaccgacacatataatta 11927106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 22652054 - 22652012
Alignment:
Q  268 gtcgtgtccgacaccaacacgacaccgacacatataattatat 310  Q
    ||||||||||||||| ||||||||||||||| | |||||||||    
T  22652054 gtcgtgtccgacaccgacacgacaccgacacttgtaattatat 22652012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 12606841 - 12606882
Alignment:
Q  307 atataattacgttgaattgtatgattttatcaaattattagc 348  Q
    |||||||||| ||||||| ||||||||| |||||||||||||    
T  12606841 atataattacattgaattatatgattttctcaaattattagc 12606882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 26902151 - 26902195
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| ||||||||||||||  | ||||||||||||||||||||||    
T  26902151 cacgtgtcgtgtccgacactcatacgacaccgacacatataatta 26902195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 309
Target Start/End: Original strand, 44132628 - 44132666
Alignment:
Q  271 gtgtccgacaccaacacgacaccgacacatataattata 309  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  44132628 gtgttcgacaccaacacgacaccgacacatataattata 44132666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 5225595 - 5225628
Alignment:
Q  269 tcgtgtccgacaccaacacgacaccgacacatat 302  Q
    ||||||||||||||||||||||||||||||||||    
T  5225595 tcgtgtccgacaccaacacgacaccgacacatat 5225628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 35952629 - 35952670
Alignment:
Q  307 atataattacgttgaattgtatgattttatcaaattattagc 348  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  35952629 atataattacattgaattatatgattttatcaaattattagc 35952670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 1747297 - 1747215
Alignment:
Q  271 gtgtccgacaccaacacgacaccgacacatataatta--tataattacgttgaattgtatgattttatcaaattattagcggt 351  Q
    |||| ||||||||||||||||| |||||||||||| |  ||||||||   |||||| | ||||||| |||| |||||||||||    
T  1747297 gtgttcgacaccaacacgacactgacacatataataacgtataattaaactgaattatgtgattttctcaatttattagcggt 1747215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 5414143 - 5414192
Alignment:
Q  258 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||| ||||||||||||||  |||||||||||| |||||||||||    
T  5414143 tcagacacgtgtcgtgtccgacactgacacgacaccgatacatataatta 5414192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 46083962 - 46084011
Alignment:
Q  258 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||| ||||||||||| ||  ||||||||||||||||||||||||    
T  46083962 tcagacacgtgtcgtgtccgatactgacacgacaccgacacatataatta 46084011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 848028 - 847988
Alignment:
Q  269 tcgtgtccgacaccaacacgacaccgacacatataattata 309  Q
    |||||||||||||||||| ||||||||||| | ||||||||    
T  848028 tcgtgtccgacaccaacaagacaccgacacttgtaattata 847988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 3712521 - 3712565
Alignment:
Q  307 atataattacgttgaattgtatgattttatcaaattattagcggt 351  Q
    |||||||||| |||||||  |||||||| ||||||||||||||||    
T  3712521 atataattacattgaattacatgattttctcaaattattagcggt 3712565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 4100038 - 4100002
Alignment:
Q  272 tgtccgacaccaacacgacaccgacacatataattat 308  Q
    ||||||||||  |||||||||||||||||||||||||    
T  4100038 tgtccgacacagacacgacaccgacacatataattat 4100002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 20521872 - 20521928
Alignment:
Q  318 ttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtc 374  Q
    ||||||| | ||||||||||||||||||| |||||| ||  |||| |||||||||||    
T  20521872 ttgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtc 20521928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 22234866 - 22234910
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||||||| |||||| |||||||||||||||||| |||||    
T  22234866 cacgtgtcgtgtcagacaccgacacgacaccgacacatagaatta 22234910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 30982854 - 30982898
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||||||| |||||| ||||||||||||||| ||||||||    
T  30982854 cacgtgtcgtgtctgacaccgacacgacaccgacacttataatta 30982898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 241677 - 241633
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||||||||||||||||||||||||||||||  |||||||    
T  241677 cacgtgtcgtgtccgacaccaacacgacaccgacactcataatta 241633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 6630896 - 6630932
Alignment:
Q  271 gtgtccgacaccaacacgacaccgacacatataatta 307  Q
    ||||||||||||||||||||| |||||||||||||||    
T  6630896 gtgtccgacaccaacacgacatcgacacatataatta 6630932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 19206119 - 19206087
Alignment:
Q  277 gacaccaacacgacaccgacacatataattata 309  Q
    |||||||||| ||||||||||||||||||||||    
T  19206119 gacaccaacaagacaccgacacatataattata 19206087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 26329358 - 26329402
Alignment:
Q  263 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||||||| |||||| ||||||| ||||||||||||||||    
T  26329358 cacgtgtcgtgtctgacaccgacacgacgccgacacatataatta 26329402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 307
Target Start/End: Original strand, 8039820 - 8039855
Alignment:
Q  272 tgtccgacaccaacacgacaccgacacatataatta 307  Q
    ||||||||||| ||||||||||||||||||||||||    
T  8039820 tgtccgacaccgacacgacaccgacacatataatta 8039855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 28678378 - 28678340
Alignment:
Q  271 gtgtccgacaccaacacgacaccgacacatataattata 309  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  28678378 gtgtctgacaccaacacgacaccgacacatacaattata 28678340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 11666032 - 11665983
Alignment:
Q  258 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||| ||||||||  ||| ||||||||||||||||||||||||||    
T  11666032 tcagacacgtgtcgtgtctaacatcaacacgacaccgacacatataatta 11665983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 5967 - 6016
Alignment:
Q  258 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 307  Q
    |||| |||| ||||||| ||||||| | ||||||||||||||||||||||    
T  5967 tcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataatta 6016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Complemental strand, 16209 - 16180
Alignment:
Q  271 gtgtccgacaccaacacgacaccgacacat 300  Q
    ||||||||||||||||||||||||||||||    
T  16209 gtgtccgacaccaacacgacaccgacacat 16180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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