View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4767_high_3 (Length: 386)
Name: NF4767_high_3
Description: NF4767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4767_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 5 - 373
Target Start/End: Original strand, 38728526 - 38728893
Alignment:
| Q |
5 |
cagtacatatctattatgatatagccttcctaaacatccaaagagtgtgcacctcaaacacctattagatattaagactgtgtttacattgcccttcccg |
104 |
Q |
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| T |
38728526 |
cagtacatatctgttatggtataattttcccaaacatatgaagagcgtacacctcaaa-acctattagatattaagcctgtgtttacattgccctgcctg |
38728624 |
T |
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| Q |
105 |
caattagaggtttaggaggtgatagagatctgatttcgggtgcagaattggggaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaat |
204 |
Q |
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| T |
38728625 |
caattagaggtttaggaggggatagagatctgatttcgggtgcagaattggggaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaat |
38728724 |
T |
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| Q |
205 |
ttcattcagaagaaactgttaaactatcggtttcttaaaccacttcatgacagaatctcctggtgctctaagaacaactttactcacctcaaatggagac |
304 |
Q |
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| T |
38728725 |
ttcattcagaagaaactgctgaactattggtttcttaaaccactccatgacagaatctcccggcgccctaagaaccactttacttacctcaaacggagac |
38728824 |
T |
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| Q |
305 |
tctaccgagcttaacatctgcgcaatcacaatctttaaagttggtcccgtcaccaatttaatccgtctc |
373 |
Q |
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| T |
38728825 |
tctactgagcttaacatctgcgcaatcacaatctttaaagttggtcccgtcaccaatttaatccgtctc |
38728893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 140 - 372
Target Start/End: Complemental strand, 386882 - 386650
Alignment:
| Q |
140 |
tcgggtgcagaattggggaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaatttcattcagaagaaactgttaaactatcggtttct |
239 |
Q |
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| T |
386882 |
tcgggtgcagaattgggaaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaatttcattcagaagaaactgctgaactatcggtttct |
386783 |
T |
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| Q |
240 |
taaaccacttcatgacagaatctcctggtgctctaagaacaactttactcacctcaaatggagactctaccgagcttaacatctgcgcaatcacaatctt |
339 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
386782 |
taaaccactccatgacagaatctcctggtgctctaagaacaactttactcacctcaaatggagactctaccgagcctaacatctgcacaatcacaatctt |
386683 |
T |
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| Q |
340 |
taaagttggtcccgtcaccaatttaatccgtct |
372 |
Q |
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| T |
386682 |
taaagttggtcccgtcaccaatttaatccgtct |
386650 |
T |
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