View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4767_low_1 (Length: 538)
Name: NF4767_low_1
Description: NF4767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4767_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 24144892 - 24144373
Alignment:
| Q |
18 |
tgattatgatctcattgccaatacaaactctcttcctctctccaccagataatccgggaacaaacgaatcgccaatcatagtattttggcacctgttttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24144892 |
tgattatgatctcattgccaatacaaactctcttcctctctccaccagataatccgggaacaaacgaatcaccaatcatagtattttggcacctgttttc |
24144793 |
T |
|
| Q |
118 |
atgcatacaatacaaaactattggcttctatatctca--aataatatctctatatttgttgtaatgcttatattagggtctgggtcaatagtcatgtggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
24144792 |
atgcatacaatacaaaactattggcttctataactcagaaataatatctctatatttgttgtaatgcttatattagtgtctgggtcaatagtcatgcggt |
24144693 |
T |
|
| Q |
216 |
ctgaccagcgacccattgt--------ttcgaccgatgacctagtgacctaatgccttgaccgggtcgatcaccggttcgggttttaaaacaccagttat |
307 |
Q |
| |
|
|||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |||||| |
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| T |
24144692 |
ctgaccagtgacccattgagccattggtccgaccaatgacctagtgacccaatgccttgaccgggtcgatcactggtccgggttttaaaacactagttat |
24144593 |
T |
|
| Q |
308 |
tatggaaccatttacctctccaagccaagctcatagatgacatctaatgctcttttttccttttgttccttagtgaatgtcttcggtagtcttaaccgtg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
24144592 |
tatggaaccatttacctctccaagccaagctcatagatgacatctaatgctcttttttccttttgttccttagttaatgtcttcggtagtcttaaccgtg |
24144493 |
T |
|
| Q |
408 |
ctgtgtatgtcaatgtctctttcacagttaggtgagtaaacaaaacatcatcttgtgtcacaaaccctatcctgcaatcatatgcttgttgtaagtcaca |
507 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24144492 |
ctgtgtatgtcaatgtctctttcacagttaggtgagtaaacaaaacatcatcttgtgtcacaaaccctatcctgcaatcatatgcttgttgtaagtcaca |
24144393 |
T |
|
| Q |
508 |
ttgagctctgactaattcat |
527 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
24144392 |
ttgagctctgactaattcat |
24144373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 304 - 503
Target Start/End: Complemental strand, 24126481 - 24126278
Alignment:
| Q |
304 |
ttattatggaaccatttacctctccaagccaagctcatagatgacatctaatgctcttttttccttttgttccttagtgaatgtcttcggtagtcttaac |
403 |
Q |
| |
|
||||| || |||||||||||| || || ||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| || || |||||| |
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|
| T |
24126481 |
ttattgtgcaaccatttacctttctaatccaagctcatagatgacatctaaagctctttgttccttttgttccttagttaatgtctttggaagccttaac |
24126382 |
T |
|
| Q |
404 |
cgtgctgtgtatgtcaatgtctctttcacagttaggtgagtaaacaaaacatcatcttgtgtcacaaaccctatcctgca----atcatatgcttgttgt |
499 |
Q |
| |
|
|| || | ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |
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|
| T |
24126381 |
cgagccgcgtacgttaatgtctctttcacagttaggtgaggaaacaaaacatcatcttgtgtcacaaatcctatcctgcaagtcatcatatgcttcttgt |
24126282 |
T |
|
| Q |
500 |
aagt |
503 |
Q |
| |
|
|||| |
|
|
| T |
24126281 |
aagt |
24126278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 24126666 - 24126536
Alignment:
| Q |
18 |
tgattatgatctcattgccaatacaaactctcttcctctctccaccagataatccgggaacaaacgaatcgccaatcatagtattttggcacctgttttc |
117 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||| ||| | || |||||||||| ||||||||||||||| |
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|
| T |
24126666 |
tgattataatctcattaccaatacaaactctcttcctctctccaccggatactccacgaacaaatgaaccaccgatcatagtatcttggcacctgttttc |
24126567 |
T |
|
| Q |
118 |
atgcatacaatacaaaactattggcttctat |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24126566 |
atgcatacaatacaaaactattggcttctat |
24126536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 18315497 - 18315536
Alignment:
| Q |
260 |
tgccttgaccgggtcgatcaccggttcgggttttaaaaca |
299 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
18315497 |
tgccttgaccggatcgatcaccggtccgggttttaaaaca |
18315536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 317 - 482
Target Start/End: Original strand, 43532976 - 43533141
Alignment:
| Q |
317 |
atttacctctccaagccaagctcatagatgacatctaatgctcttttttccttttgttccttagtgaatgtcttcggtagtcttaaccgtgctgtgtatg |
416 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||| ||||||| |||||| || || || || ||||| || || | ||||| || |||| |||| |
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|
| T |
43532976 |
atttacctctccaatcctagctcatagataacatctaaagctctttgttccttctgctctttggttaatgtttttggcaaccttaaacgagctgcatatg |
43533075 |
T |
|
| Q |
417 |
tcaatgtctctttcacagttaggtgagtaaacaaaacatcatcttgtgtcacaaaccctatcctgc |
482 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||||| |
|
|
| T |
43533076 |
tcaatgtttctttcacagttaggtgaggaaacagaacatcatcttgtgtcacaaatccaatcctgc |
43533141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 43532810 - 43532915
Alignment:
| Q |
18 |
tgattatgatctcattgccaatacaaactctcttcctctctccaccagataatccgggaacaaacgaatcgccaatcatagtattttggcacctgttttc |
117 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| | ||||| ||| | || |||||||| | ||||||||| ||| | |
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|
| T |
43532810 |
tgattataatctcatttccaatacaaactctcttcctctctccaccagatactcctcggacaaaggaacctcctatcatagtgtcttggcacctatttcc |
43532909 |
T |
|
| Q |
118 |
atgcat |
123 |
Q |
| |
|
|||||| |
|
|
| T |
43532910 |
atgcat |
43532915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 29685536 - 29685492
Alignment:
| Q |
197 |
gggtcaatagtcatgtggtctgaccagcgacccattgtttcgacc |
241 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||| ||||||| |
|
|
| T |
29685536 |
gggtcaatagtcatgcggtccgaccagtgacccattgattcgacc |
29685492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 40991355 - 40991458
Alignment:
| Q |
196 |
tgggtcaatagtcatgtggtctgaccagcgacccattgtttcgaccgatgacctagtgacctaatgccttgaccgggtcgatcaccggttcgggttttaa |
295 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||||||||| | ||||| ||| | ||||| | | ||||||||||||||||| |||||| |||||||||| |
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|
| T |
40991355 |
tgggtcaatagtcatgcggtccgaccagtgacccattggtccgaccactgatccagtgatccagtgccttgaccgggtcgactaccggtccgggttttaa |
40991454 |
T |
|
| Q |
296 |
aaca |
299 |
Q |
| |
|
|||| |
|
|
| T |
40991455 |
aaca |
40991458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 29538129 - 29538078
Alignment:
| Q |
248 |
ctagtgacctaatgccttgaccgggtcgatcaccggttcgggttttaaaaca |
299 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
29538129 |
ctagtgacccagtgccttgatcgggtcgatcaccggtccgggttttaaaaca |
29538078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 52163305 - 52163366
Alignment:
| Q |
238 |
gaccgatgacctagtgacctaatgccttgaccgggtcgatcaccggttcgggttttaaaaca |
299 |
Q |
| |
|
|||| |||| ||||| ||| | ||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
52163305 |
gaccaatgaactagtaacccagtgccttgaccgtgtcgatcaccggtccgggttttaaaaca |
52163366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 10308728 - 10308830
Alignment:
| Q |
196 |
tgggtcaatagtcatgtggtctgaccagcgacccattgtttcgaccgatgacctagtgacctaatgccttgaccgggtcgatcaccggttcgggttttaa |
295 |
Q |
| |
|
|||||||||||||||| |||| |||||| || |||||| | |||| | |||| ||||||||| |||||||||| | |||| |||| | |||||||||| |
|
|
| T |
10308728 |
tgggtcaatagtcatgcggtccgaccagtgatccattggtctgacc-acgacccagtgacctagtgccttgaccagatcgactaccgatccgggttttaa |
10308826 |
T |
|
| Q |
296 |
aaca |
299 |
Q |
| |
|
|||| |
|
|
| T |
10308827 |
aaca |
10308830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 46210548 - 46210587
Alignment:
| Q |
260 |
tgccttgaccgggtcgatcaccggttcgggttttaaaaca |
299 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46210548 |
tgccttgaccgggtcgatcaccggtccgggttttaaaaca |
46210587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 5194003 - 5194098
Alignment:
| Q |
197 |
gggtcaatagtcatgtggtctgaccagcgacccattgtttcgaccgatgacctagtgacctaatgccttgaccgggtcgatcaccggttcgggttt |
292 |
Q |
| |
|
||||||||| ||||| ||| |||||| ||||||||| ||||||| ||||| ||| ||| | | ||||||| ||||||||||||||||| ||||| |
|
|
| T |
5194003 |
gggtcaataatcatgcggtttgaccaatgacccattggttcgaccactgacccagtaacccagtaccttgactgggtcgatcaccggttcaggttt |
5194098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 41266855 - 41266902
Alignment:
| Q |
252 |
tgacctaatgccttgaccgggtcgatcaccggttcgggttttaaaaca |
299 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
41266855 |
tgacccaatgccttgaccgggtcgactaccggtccgggttttaaaaca |
41266902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 6269706 - 6269626
Alignment:
| Q |
204 |
tagtcatgtggtctgaccagcgacccattgtttcgaccgatgacctagtgacctaatgccttgaccgggtcgatcaccggt |
284 |
Q |
| |
|
|||||||| ||||||||||| |||||| || |||| | |||| | || |||| ||||| |||||||| |||||||||||| |
|
|
| T |
6269706 |
tagtcatgcggtctgaccagtgacccactgattcggcaaatgatccagcgacccaatgctttgaccggatcgatcaccggt |
6269626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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