View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4767_low_2 (Length: 425)

Name: NF4767_low_2
Description: NF4767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4767_low_2
NF4767_low_2
[»] chr6 (1 HSPs)
chr6 (14-408)||(13627831-13628225)
[»] chr7 (4 HSPs)
chr7 (131-237)||(9416179-9416284)
chr7 (343-409)||(4634017-4634083)
chr7 (297-351)||(22763439-22763493)
chr7 (344-409)||(32238934-32238999)
[»] chr1 (1 HSPs)
chr1 (343-398)||(23971075-23971130)
[»] chr8 (2 HSPs)
chr8 (347-409)||(15151308-15151370)
chr8 (347-398)||(16822009-16822060)
[»] chr3 (1 HSPs)
chr3 (343-397)||(9021814-9021868)
[»] chr2 (1 HSPs)
chr2 (343-398)||(19569593-19569648)
[»] chr4 (1 HSPs)
chr4 (348-398)||(17405187-17405237)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Complemental strand, 13628225 - 13627831
Alignment:
Q  14 caataaccaccactttaatttcctttactgttatcatacgtttctacttctcctgatattgttctaagttcctttaaaaccctagtagcctacaccaaca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13628225 caataaccaccactttaatttcctttactgttatcatacgtttctacttctcctgatattgttctaagttcctttaaaaccctagtagcctacaccaaca 13628126  T
Q  114 aatagaattaagccattatcaccatctttcaaatagtttcaaaatcttattctaaacttgtgtagcttcgaagtttgaatccttccactattgcaagcaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13628125 aatagaattaagccattatcaccatctttcaaatagtttcaaaatcttattctaaacttgtgtagcttcgaagtttgaattcttccactattgcaagcaa 13628026  T
Q  214 tttgtgcggctttgtagtgtgctgctgttaggagggaagtgcctaaggtaaggcttttttcccatacatttttaccaaatgctaaattgatattgaatct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13628025 tttgtgcggctttgtagtgtgctgctgttaggagggaagtgcctaaggtaaggcttttttcccatacatttttaccaagtgctaaattgatattgaatct 13627926  T
Q  314 caaaagggtgctctacataaaaaatttggcaaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcgttca 408  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  13627925 caaaagggtgctctacataataaatttggcaaagattcatatttgtgtttttcttgcataatgtcaaataaaatgtttaatagtcatttcgttca 13627831  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 9416284 - 9416179
Alignment:
Q  131 atcaccatctttcaaatagtttcaaaatcttattctaaacttgtgtagcttcgaagtttgaatccttccactattgcaagcaatttgtgcggctttgtag 230  Q
    |||||||||||||||||| |||| || |||||||| ||||||| |||||||  || |||||||| ||||  | ||||||||| ||| |||||||||||||    
T  9416284 atcaccatctttcaaataatttccaagtcttattccaaacttg-gtagctttaaattttgaatctttcccatgttgcaagcattttctgcggctttgtag 9416186  T
Q  231 tgtgctg 237  Q
    | |||||    
T  9416185 tatgctg 9416179  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 4634017 - 4634083
Alignment:
Q  343 caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcgttcat 409  Q
    |||||||||||| |||| ||||||||||||||||||| ||   ||||||||||||| || |||||||    
T  4634017 caaagattcatatttgtatttttcttgcataatgtcatatgaaatgtttaatagtctttccgttcat 4634083  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 22763493 - 22763439
Alignment:
Q  297 aaattgatattgaatctcaaaagggtgctctacataaaaaatttggcaaagattc 351  Q
    ||||||||||||||||||||||||||||||| |||| |   ||||||||||||||    
T  22763493 aaattgatattgaatctcaaaagggtgctctccatatattttttggcaaagattc 22763439  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 409
Target Start/End: Original strand, 32238934 - 32238999
Alignment:
Q  344 aaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcgttcat 409  Q
    ||||||||||||||| |||||| ||||| ||||||||||   || |||||||||| ||| ||||||    
T  32238934 aaagattcatacttgcgtttttgttgcacaatgtcaaatgaaatatttaatagtcttttggttcat 32238999  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 23971075 - 23971130
Alignment:
Q  343 caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc 398  Q
    ||||||||||||||||||||||||||||| ||||||||||   |||||||||||||    
T  23971075 caaagattcatacttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtc 23971130  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 15151370 - 15151308
Alignment:
Q  347 gattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcgttcat 409  Q
    |||| ||||||||||| |||||||||||||||||||   ||||||||||||| ||||||||||    
T  15151370 gatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttttcgttcat 15151308  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 398
Target Start/End: Complemental strand, 16822060 - 16822009
Alignment:
Q  347 gattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc 398  Q
    ||||||||||||||||||||||| | ||||||||||   |||||||||||||    
T  16822060 gattcatacttgtgtttttcttgtacaatgtcaaatgaaatgtttaatagtc 16822009  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 9021814 - 9021868
Alignment:
Q  343 caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagt 397  Q
    |||||||||||||||||||| |||||||| ||||||||||   ||||||||||||    
T  9021814 caaagattcatacttgtgttcttcttgcacaatgtcaaatgaaatgtttaatagt 9021868  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 19569648 - 19569593
Alignment:
Q  343 caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc 398  Q
    |||| ||||||| |||||||||||||||| ||||||||||   |||||||||||||    
T  19569648 caaaaattcatatttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtc 19569593  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 17405187 - 17405237
Alignment:
Q  348 attcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc 398  Q
    ||||||||||||||| |||||||| ||||||||||   |||||||||||||    
T  17405187 attcatacttgtgttcttcttgcacaatgtcaaatgaaatgtttaatagtc 17405237  T

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