View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4767_low_3 (Length: 389)
Name: NF4767_low_3
Description: NF4767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4767_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 36687804 - 36687529
Alignment:
| Q |
1 |
cacaaaagtacaacaagtagcatcaaattgtcccgttgatggagcgattgaaacaacaaaaatgaaaaat--------tacaatgcgttgatgttattat |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
36687804 |
cacaaaagtacaacaagtagcatcaaattgtcccgttgatggagcgattgaaacaacaacaatgaaaaataataaagttacaatgcgttgatgttattat |
36687705 |
T |
|
| Q |
93 |
caaataacaaaagaaaattatgcattaatctacaactctttcataatgcctttcacta--cataagcaatatatgcgactataccttatatacatggtag |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
36687704 |
caaataacaaaagaaaattatgcattaatctacaactctttcataatgcctttcactatacataagcaatatatgtgattataccttatatacatggtag |
36687605 |
T |
|
| Q |
191 |
tatgtagttaaataaacaaatctaatcaggtaaaaagaaaatggttacaggaatccgagactaatcatagcaatgt |
266 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
36687604 |
tgtgtagttaaataaacaaatctaatcaggcaaaaagaaaatggttacaggaatccgagatttatcatggcaatgt |
36687529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 260 - 372
Target Start/End: Complemental strand, 36687066 - 36686950
Alignment:
| Q |
260 |
gcaatgtatatcgtatatagttagacactcatcaaaacgaaaatgaacacagtaaccgatacttatcaata----caagatattacaaatcaatattagg |
355 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36687066 |
gcaatgtatattgtatatagttagacactcatcaaaatgaaaatgaacacagtaaccgatacttatcaatacaagcaagatattacaaatcaatattagg |
36686967 |
T |
|
| Q |
356 |
aacacatataagcatac |
372 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36686966 |
aacacatataagcatac |
36686950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 56339778 - 56339834
Alignment:
| Q |
4 |
aaaagtacaacaa-gtagcatcaaattgtcccgttgatggagcgattgaaacaacaa |
59 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
56339778 |
aaaagtacaacaaagtagtatcaaattgtcccgttgatagagccatcgaaacaacaa |
56339834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University