View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4767_low_7 (Length: 317)
Name: NF4767_low_7
Description: NF4767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4767_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 44 - 298
Target Start/End: Complemental strand, 33975004 - 33974752
Alignment:
| Q |
44 |
attaaatattatgacacgttgatgttatgttattgttcactaatcaagaatctctgaagttttctcactnnnnnnnntaaagatattttgacaattgaaa |
143 |
Q |
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| T |
33975004 |
attaaatattatgacacgttgatgttatgttattgttcactaatcaagaatctctgaagttttcttactaaaaaaa-taaaaatattttgaccattgaaa |
33974906 |
T |
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| Q |
144 |
gataaaaagaggagggtttttaatttgataaaatgttgagccgttagttaaagtaggggtgaagaatcttcggtgaagatttaaaacctaagaaaatata |
243 |
Q |
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| T |
33974905 |
gataaaaagaggagtgtttttaatttgataaaatgttgagccgttagttaaa-taggggcgaagaatcttcagtgaagatttaaaacctaagaaaatata |
33974807 |
T |
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| Q |
244 |
caggccatccttttccaatgaacacattggcatttggtgcattgtatgccctaca |
298 |
Q |
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| T |
33974806 |
aaggccatccttttccaatgaacacattggcatttggtgcattgtatgccctaca |
33974752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 33979261 - 33979226
Alignment:
| Q |
9 |
ttattcttcaatttgttttggttttaaatatccgta |
44 |
Q |
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| T |
33979261 |
ttattcttcaatttgttttggttttaaatatccgta |
33979226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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