View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4767_low_8 (Length: 247)

Name: NF4767_low_8
Description: NF4767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4767_low_8
NF4767_low_8
[»] chr7 (4 HSPs)
chr7 (45-246)||(9987691-9987892)
chr7 (1-44)||(9987062-9987105)
chr7 (10-44)||(39286164-39286198)
chr7 (1-38)||(17218944-17218981)
[»] chr8 (3 HSPs)
chr8 (40-246)||(14331086-14331292)
chr8 (1-44)||(14330359-14330402)
chr8 (10-44)||(24251056-24251090)
[»] chr5 (2 HSPs)
chr5 (40-246)||(21724558-21724764)
chr5 (45-246)||(21804284-21804485)
[»] chr2 (1 HSPs)
chr2 (121-191)||(6061728-6061798)
[»] chr4 (3 HSPs)
chr4 (10-44)||(18749192-18749226)
chr4 (10-43)||(2302764-2302797)
chr4 (10-43)||(8515935-8515968)
[»] chr3 (4 HSPs)
chr3 (10-44)||(17720886-17720920)
chr3 (10-44)||(19022115-19022149)
chr3 (10-43)||(4176008-4176041)
chr3 (10-43)||(15714335-15714368)
[»] chr1 (2 HSPs)
chr1 (10-43)||(30774711-30774744)
chr1 (10-44)||(23246238-23246272)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 45 - 246
Target Start/End: Original strand, 9987691 - 9987892
Alignment:
Q  45 tgtggtttgcatttttgctgttcttgagttgctgtttattaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacct 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9987691 tgtggtttgcatttttgctgttcttgagttgctgtttattaggactatatatcttattgggatctttggctagatttacacccttatgtattcaaaacct 9987790  T
Q  145 gagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttctgtgctg 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9987791 gagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttttgtgctg 9987890  T
Q  245 ct 246  Q
    ||    
T  9987891 ct 9987892  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9987062 - 9987105
Alignment:
Q  1 aagcttatctgtctgaatttttcggacggatttgggacggtttt 44  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  9987062 aagcttatctgtctgaatttttcggacggatttaggacggtttt 9987105  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 39286164 - 39286198
Alignment:
Q  10 tgtctgaatttttcggacggatttgggacggtttt 44  Q
    ||||||||||||||||||| |||||||||||||||    
T  39286164 tgtctgaatttttcggacgaatttgggacggtttt 39286198  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17218981 - 17218944
Alignment:
Q  1 aagcttatctgtctgaatttttcggacggatttgggac 38  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  17218981 aagcttatttgtctgaatttttcggacagatttgggac 17218944  T

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Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 40 - 246
Target Start/End: Original strand, 14331086 - 14331292
Alignment:
Q  40 gtttttgtggtttgcatttttgctgttcttgagttgctgtttattaggactatatatcttattaggatctttggctagatttacacccttatgtattcaa 139  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14331086 gtttttgtggtttgcattttcgctgttcttgagttgttgtttatcaggactatatatcttattaggatctttggctagatttacacccttatgtattcaa 14331185  T
Q  140 aacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttctg 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  14331186 aacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtaatttatgttgaactttgttgtgttttg 14331285  T
Q  240 tgctgct 246  Q
    || ||||    
T  14331286 tgttgct 14331292  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14330359 - 14330402
Alignment:
Q  1 aagcttatctgtctgaatttttcggacggatttgggacggtttt 44  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  14330359 aagcttatttgtctgaatttttcggacggatttgggacggtttt 14330402  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 24251056 - 24251090
Alignment:
Q  10 tgtctgaatttttcggacggatttgggacggtttt 44  Q
    ||||||||||||| |||||||||||||||||||||    
T  24251056 tgtctgaattttttggacggatttgggacggtttt 24251090  T

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Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 40 - 246
Target Start/End: Original strand, 21724558 - 21724764
Alignment:
Q  40 gtttttgtggtttgcatttttgctgttcttgagttgctgtttattaggactatatatcttattaggatctttggctagatttacacccttatgtattcaa 139  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21724558 gtttttgtggtttgcattttcgctgttcttgagttgttgtttatcaggactatatatcttattaggatctttggctagatttacacccttatgtattcaa 21724657  T
Q  140 aacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttctg 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  21724658 aacctgagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtaatttatgttgaactttgttgtgttttg 21724757  T
Q  240 tgctgct 246  Q
    || ||||    
T  21724758 tgttgct 21724764  T

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Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 45 - 246
Target Start/End: Original strand, 21804284 - 21804485
Alignment:
Q  45 tgtggtttgcatttttgctgttcttgagttgctgtttattaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacct 144  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21804284 tgtggtttgcattttcgctgttcttgagttgttgtttatcaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacct 21804383  T
Q  145 gagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttctgtgctg 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||    
T  21804384 gagtactagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtaatttatgttgaactttgttgtgttttgtgttg 21804483  T
Q  245 ct 246  Q
    ||    
T  21804484 ct 21804485  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 6061798 - 6061728
Alignment:
Q  121 tacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaaca 191  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  6061798 tacacccttatttattcaaaacctgagtactacaatgctaatttcttgaatggtgttgagatcttttaaca 6061728  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 18749226 - 18749192
Alignment:
Q  10 tgtctgaatttttcggacggatttgggacggtttt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  18749226 tgtctgaatttttcggacggatttgggacggtttt 18749192  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 2302797 - 2302764
Alignment:
Q  10 tgtctgaatttttcggacggatttgggacggttt 43  Q
    |||||||||||||||||| |||||||||||||||    
T  2302797 tgtctgaatttttcggacagatttgggacggttt 2302764  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 8515968 - 8515935
Alignment:
Q  10 tgtctgaatttttcggacggatttgggacggttt 43  Q
    ||||||||||||||||||||||||| ||||||||    
T  8515968 tgtctgaatttttcggacggatttgagacggttt 8515935  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 17720920 - 17720886
Alignment:
Q  10 tgtctgaatttttcggacggatttgggacggtttt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  17720920 tgtctgaatttttcggacggatttgggacggtttt 17720886  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 19022149 - 19022115
Alignment:
Q  10 tgtctgaatttttcggacggatttgggacggtttt 44  Q
    |||||||||||||||||||||||||||||||||||    
T  19022149 tgtctgaatttttcggacggatttgggacggtttt 19022115  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 4176041 - 4176008
Alignment:
Q  10 tgtctgaatttttcggacggatttgggacggttt 43  Q
    |||||||||||||||||||||||||||| |||||    
T  4176041 tgtctgaatttttcggacggatttgggatggttt 4176008  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 15714335 - 15714368
Alignment:
Q  10 tgtctgaatttttcggacggatttgggacggttt 43  Q
    |||||||||||||||||||||||| |||||||||    
T  15714335 tgtctgaatttttcggacggattttggacggttt 15714368  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 30774711 - 30774744
Alignment:
Q  10 tgtctgaatttttcggacggatttgggacggttt 43  Q
    ||||||||||||||||||||||||||||||||||    
T  30774711 tgtctgaatttttcggacggatttgggacggttt 30774744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 23246238 - 23246272
Alignment:
Q  10 tgtctgaatttttcggacggatttgggacggtttt 44  Q
    ||||||||||||||||||||||||||||| |||||    
T  23246238 tgtctgaatttttcggacggatttgggacagtttt 23246272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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