View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4767_low_9 (Length: 242)
Name: NF4767_low_9
Description: NF4767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4767_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 10829715 - 10829920
Alignment:
| Q |
18 |
ggcgggaagtgagtaaaagtcaatgattatttcatttaagaatcagattctcctaaacaattcgatatttggtgaagtttattaagcacttgaattcggt |
117 |
Q |
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| T |
10829715 |
ggcggaaagcgagtaaaagtcaatgattatttcatctaagaatcagattctcctaaacaattcgatatttggtgaagttcattaagcacttgaattcagt |
10829814 |
T |
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| Q |
118 |
tgctatgttttttctttccatttttggttacaacaaaatactagaaattattactattacttgaatattctagcaaccatggaaaatccaaccacaaagt |
217 |
Q |
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| T |
10829815 |
tgctatgttttttctttccatttttggttacaacaaaatactagaaattattacttttacttgaatattctagcaaccatggaaaatccaaccacaaagt |
10829914 |
T |
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| Q |
218 |
cgagac |
223 |
Q |
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|||||| |
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| T |
10829915 |
cgagac |
10829920 |
T |
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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 203
Target Start/End: Complemental strand, 24412612 - 24412433
Alignment:
| Q |
24 |
aagtgagtaaaagtcaatgattatttcatttaagaatcagattctcctaaacaattcgatatttggtgaagtttattaagcacttgaattcggttgctat |
123 |
Q |
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| T |
24412612 |
aagtgagtaaaaatcaataattgttccacttagaaatcaaattctactaaacacttcgacatttggggaagtttattaaatactcgagtttgattgctat |
24412513 |
T |
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| Q |
124 |
gttttttctttccatttttggttacaacaaaatactagaaattattactattacttgaatattctagcaaccatggaaaa |
203 |
Q |
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| T |
24412512 |
gtttttaatttccatttctggttacatcaaaatactataaattattaattttacttgaaaattatggtaatcatggaaaa |
24412433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 203
Target Start/End: Original strand, 45487186 - 45487365
Alignment:
| Q |
24 |
aagtgagtaaaagtcaatgattatttcatttaagaatcagattctcctaaacaattcgatatttggtgaagtttattaagcacttgaattcggttgctat |
123 |
Q |
| |
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||||| |||||| ||||| ||| || || ||| ||||| ||||| ||||||| || || ||| | ||||||||||||| ||| || || | ||||||| |
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| T |
45487186 |
aagtgggtaaaaatcaataattgttccacttagaaatcaaattctactaaacactttgacattaagggaagtttattaagtactcgagtttgattgctat |
45487285 |
T |
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| Q |
124 |
gttttttctttccatttttggttacaacaaaatactagaaattattactattacttgaatattctagcaaccatggaaaa |
203 |
Q |
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|||||| ||||||||| |||||||| |||||||||| |||||||| | ||||||||| ||||||| || ||||||||| |
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| T |
45487286 |
gtttttaatttccatttctggttacagcaaaatactataaattattgattttacttgaaaattctagtaatcatggaaaa |
45487365 |
T |
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