View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768-Insertion-1 (Length: 850)
Name: NF4768-Insertion-1
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 754; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 7 - 847
Target Start/End: Original strand, 39559532 - 39560372
Alignment:
| Q |
7 |
atataccgtcaaactttttgcacatacatccgatcaaaatatgttataaagagatattgatagctatattttaggaacgaatttaaacaagtgacattat |
106 |
Q |
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| T |
39559532 |
atataccgtaaaactttttgcacatacatccgatcaaaatatgttataaagagatattgatagctatattttaggaacgaacttaaacaagtgacattat |
39559631 |
T |
|
| Q |
107 |
tgagttttgatttgataaatgcatgtgtaaaaaagttttacactattgatatatacaaattaaatccgttgaagaaataaaaaatttgagtgagggagta |
206 |
Q |
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| T |
39559632 |
tgagttttgatttgataaatgcacgtgtaaaaaagttttacactattgatatatacaaattaaatccgttgaagaaataaaaaaattgagtgagggagta |
39559731 |
T |
|
| Q |
207 |
tgtaaatgttgggatatccattagagttcttaaagtggtttgtcgaagcaaaaaacgatatannnnnnnn-aaatgtaggattttcctccggccggttaa |
305 |
Q |
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| T |
39559732 |
tgtaaatgttgggatatccattagagttcttaaagtggtttgtcgaagcaaaaagcaagatatttttttttaaatgtaggattttcctctggccggttag |
39559831 |
T |
|
| Q |
306 |
ttttttcgccatctctcttatttcattcttgacttgaactcaagaagataatttcttccccacgcacatgcttttctaaaaacacacgatctctctggat |
405 |
Q |
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| T |
39559832 |
ttttttcgccatctctcttatttcattcttgacttgaactcaagaagataatttcttccccacgcacacgcttttctaaaaacacacgatctctctggat |
39559931 |
T |
|
| Q |
406 |
tacataattcaaatgtgtaaaaaacgtttgttttcttgcaagcttgaaaagtgtaatccaaacaaatcgcgtgttttataaaatacgttggggagaagaa |
505 |
Q |
| |
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| T |
39559932 |
tacataattcaaatgtgtaaaaaaagtttgttttcttgcaagcttgaaaagtgtaatccaaacaaatcgcgtgttttataaaatacgttggggagaagaa |
39560031 |
T |
|
| Q |
506 |
atcttcaatatcttattacatgtttagagtattatgcacattagctcaatttatgttggagagtgaggagttaatggagtgggtatattgaaatgcctaa |
605 |
Q |
| |
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| T |
39560032 |
atcttcaatatcttattacatgtttagagtattatgcacattagctcaatttatgttggagagtgaggagttaatggagtgggtatattgaaatgcctaa |
39560131 |
T |
|
| Q |
606 |
caaacaactaatgtcgccatgatcatatctccttttgcaggataattaatgtaacatgtataatcaaattggagttctttctttacaagaggctctctaa |
705 |
Q |
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| T |
39560132 |
caaacaactaatgtcgccatgatcatatctccttttgcaggataattaatgtaacatgtataatcaaattggagttctttctttacaagaggcactctaa |
39560231 |
T |
|
| Q |
706 |
tggaggttaatttggctttctatattggatgggtaaaagtgttggcatgccactctttaatgttattttctgttatatatatttactcagcaatttgtaa |
805 |
Q |
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| T |
39560232 |
tggaggttaatttggctttctatattggatgggtaaaagtgttggcatgccactctttaatg-tattttctgttatatatatttactcagcaatttgtaa |
39560330 |
T |
|
| Q |
806 |
gatcctagtctaaactcattatataaccgttggttatgcctt |
847 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39560331 |
gatcctagtctaaactcattatataaccgttggttatgcctt |
39560372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 3214408 - 3214446
Alignment:
| Q |
134 |
taaaaaagttttacactattgatatatacaaattaaatc |
172 |
Q |
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| T |
3214408 |
taaaaaagttttacactgttgatatatacaaattaaatc |
3214446 |
T |
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