View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768-Insertion-11 (Length: 384)
Name: NF4768-Insertion-11
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768-Insertion-11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Original strand, 34505933 - 34506307
Alignment:
| Q |
10 |
tataatacctgagatccaagaatgaccgcgcctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttaaccatttacctggtggaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34505933 |
tataatacctgagatccaagaatgaccgcgcctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttaaccatttacctggtggaa |
34506032 |
T |
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| Q |
110 |
caataagttgtgcaccaccatcatttgcatactggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccacc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506033 |
caataagttgtgcaccaccatcatttgcatactggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccacc |
34506132 |
T |
|
| Q |
210 |
aaaatctgtcaaaactgcactgtgttttctgcaattgattgcaaggtaatcaaggttgcattctgctagtgatccaaatatcaaaactatagaaatcaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506133 |
aaaatctgtcaaaactgcactgtgttttctgcaattgattgcaaggtaatcaaggttgcattctgctagtgatccaaatatcaaaactatagaaatcaca |
34506232 |
T |
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| Q |
310 |
caaataacctgcacaaaacaatgataatataagtctatggacacagaaaataaaaataactacatgtaacgttta |
384 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34506233 |
caaataacctgcacaaaacaatgataatataagtttatggacacagaaaataaaaataactacatgtaacgttta |
34506307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 29762920 - 29762867
Alignment:
| Q |
168 |
aaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatctgtcaa |
221 |
Q |
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| T |
29762920 |
aaaagcctttgtattagatgtatttccatctccaacaccaccaaaatctgtcaa |
29762867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 45083556 - 45083790
Alignment:
| Q |
14 |
atacctgagatccaagaatgaccgcgcctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttaaccatttacctggtggaacaat |
113 |
Q |
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||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45083556 |
atacctgagatgcaagaatgacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttagccatttacctggtggaacaat |
45083655 |
T |
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| Q |
114 |
aagttgtgcaccaccatcatttgcatactggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaa |
213 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||| | |||||| || ||||||||| |||||||||||||||||||||||||||| |
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| T |
45083656 |
aagttgtgcaccaccatcatttgcatattggctaagattggttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacaccaccaaaa |
45083755 |
T |
|
| Q |
214 |
tctgtcaaaactgcactgtgttttctgcaattgat |
248 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
45083756 |
tctgtcaaaactgcactgtgttttctgcaattgat |
45083790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 45079265 - 45079518
Alignment:
| Q |
14 |
atacctgagatccaagaatgaccgcgcctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttaaccatttacctggtggaacaat |
113 |
Q |
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||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
45079265 |
atacctgagatccaagaataacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaacaat |
45079364 |
T |
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| Q |
114 |
aagttgtgcaccaccatcatttgcatactggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaa |
213 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||| |||||| |||||||||||| |||||||| |
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| T |
45079365 |
aagttgtgcaccaccatcatttgcatattggctaaggttggttattgctgcattaaaagcttttgtgttaagggttttgccatcaccaacagcaccaaaa |
45079464 |
T |
|
| Q |
214 |
tctgtcaaaactgcactgtgttttctgcaattgattgcaaggtaatcaaggttg |
267 |
Q |
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||||| ||||||||||||||||||||||||||||||||| | ||||||| |||| |
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| T |
45079465 |
tctgttaaaactgcactgtgttttctgcaattgattgcaggataatcaaagttg |
45079518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 45076141 - 45076375
Alignment:
| Q |
14 |
atacctgagatccaagaatgaccgcgcctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttaaccatttacctggtggaacaat |
113 |
Q |
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||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
45076141 |
atacctgagatgcaagaatgacagaatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaacaat |
45076240 |
T |
|
| Q |
114 |
aagttgtgcaccaccatcatttgcatactggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaa |
213 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| ||||||||||| | |||||| || ||||||||| |||||||||||||||||||||||||||| |
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| T |
45076241 |
aagttgtgcaccaccatcatttgcatattggctaagattggttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacaccaccaaaa |
45076340 |
T |
|
| Q |
214 |
tctgtcaaaactgcactgtgttttctgcaattgat |
248 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
45076341 |
tctgtcaaaactgcactgtgttttctgcaattgat |
45076375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 45068499 - 45068752
Alignment:
| Q |
9 |
atataatacctgagatccaagaatgaccgcgcctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttaaccatttacctggtgga |
108 |
Q |
| |
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|||| ||||||||||| |||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
45068499 |
atattatacctgagatgcaagaatgacagcacccttttggagaaaaagagtgaaatggcttgtgagattgaagcttcctgttagccatttacctggtgga |
45068598 |
T |
|
| Q |
109 |
acaataagttgtgcaccaccatcatttgcatactggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccac |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |||||| || ||||||||| |||||| || ||||||||| ||| |
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| T |
45068599 |
acaataagttgtgcaccaccatcatttgcatattggctaagattggttattgctgaattaaatgcctttgtgttaagggttttgccgtcaccaacagcac |
45068698 |
T |
|
| Q |
209 |
caaaatctgtcaaaactgcactgtgttttctgcaattgattgcaaggtaatcaa |
262 |
Q |
| |
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|||||||||| ||||||||| ||||||||| ||||||||||||| |||| |||| |
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| T |
45068699 |
caaaatctgttaaaactgcattgtgttttcggcaattgattgcatggtagtcaa |
45068752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 266 - 384
Target Start/End: Original strand, 45079544 - 45079659
Alignment:
| Q |
266 |
tgcattctgctagtgatccaaatatcaaaactatagaaatcacacaaataacctgcacaaaacaatgataatataagtctatggacacagaaaataaaaa |
365 |
Q |
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||||||||||||||||||| ||||||| ||||| ||| ||||||| ||||||||||||||||||||| | |||||||||| | || ||||||||| ||| |
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| T |
45079544 |
tgcattctgctagtgatcccaatatcagaactacagatatcacaccaataacctgcacaaaacaatggt--tataagtcta-gcacgcagaaaatataaa |
45079640 |
T |
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| Q |
366 |
taactacatgtaacgttta |
384 |
Q |
| |
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||| |||||||||||||| |
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| T |
45079641 |
taatcacatgtaacgttta |
45079659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 384
Target Start/End: Original strand, 45068783 - 45068899
Alignment:
| Q |
266 |
tgcattctgctagtgatccaaatatcaaaactatagaaatcacacaaataacctgcacaaaacaatgataatataagtctatggacacagaaaataaaaa |
365 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||| | |||||||||||||| |
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| T |
45068783 |
tgcattctgctagtgataccaatatcaaaactatagaaatcacacaaataacctgcataaaacaacagtaat-taa-tctatgcatacagaaaataaaaa |
45068880 |
T |
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| Q |
366 |
taactacatgtaacgttta |
384 |
Q |
| |
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||| || |||||| |||| |
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| T |
45068881 |
caaccacctgtaacattta |
45068899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 45076419 - 45076485
Alignment:
| Q |
265 |
ttgcattctgctagtgatccaaatatcaaaactatagaaatcacacaaataacctgcacaaaacaat |
331 |
Q |
| |
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||||||||||||| ||| |||||||||| || || ||| ||||||| |||||||||||||||||||| |
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| T |
45076419 |
ttgcattctgctaatgaaccaaatatcagaagtacagagatcacaccaataacctgcacaaaacaat |
45076485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 45083835 - 45083900
Alignment:
| Q |
266 |
tgcattctgctagtgatccaaatatcaaaactatagaaatcacacaaataacctgcacaaaacaat |
331 |
Q |
| |
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||||||||||||||| ||| ||||||| ||||| ||| ||||||| ||||||||||||||||||| |
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| T |
45083835 |
tgcattctgctagtgttcccaatatcacaactacagagatcacacgtataacctgcacaaaacaat |
45083900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 11065136 - 11065196
Alignment:
| Q |
155 |
ttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatc |
215 |
Q |
| |
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||||||||| |||||||| |||||||| || ||||||||||| ||||||||||||||||| |
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|
| T |
11065136 |
ttattgcagatttaaaagcctttgtgtttgatgtttttccatctccaacaccaccaaaatc |
11065196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 41333000 - 41332905
Alignment:
| Q |
16 |
acctgagatccaagaatgaccgcgcctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttaaccatttacctggtggaaca |
111 |
Q |
| |
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|||||||| ||||||||||| || |||| || || || | ||||||||| || |||||||||||||| ||||| |||||| | |||||||||||| |
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| T |
41333000 |
acctgagaaccaagaatgacagcatctttgtgtaggaataaagtgaaatgactggtgagattgaagctaccagtcaaccatcttcctggtggaaca |
41332905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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