View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768-Insertion-13 (Length: 384)
Name: NF4768-Insertion-13
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768-Insertion-13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 384
Target Start/End: Complemental strand, 8237496 - 8237119
Alignment:
| Q |
8 |
cacataaacaaaatccagtcctttcattaccgagaacggtctccatagaacatgatatatggtcatgaacatgggaaacaacataagatattgtcatcct |
107 |
Q |
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| T |
8237496 |
cacataaacaaaatcaagtcatttcattactgagaacagtctcaatagaagatgatatatggtcatgaacatgggaaccaacataagatattgtcgtcct |
8237397 |
T |
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| Q |
108 |
agctaacaagtcgggaaccttatttgcttgtcctaatgaaacttatcttaaaactttggtaaattctaagtgaagttttcaaaattgaaaaatagctcca |
207 |
Q |
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| T |
8237396 |
agctaacaagtcggcaatattatttgcttgtcctaatgaaacttatcttaaaattttggtaaattctaagtgaagttttcaaaattgaaaaatagctcca |
8237297 |
T |
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| Q |
208 |
aacacaaaattggtattgggtctcctagatattgcgtgaaccacttgcttacattatagttcgatagaaaagttagataaactcatgctaccaaccc-ct |
306 |
Q |
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| T |
8237296 |
aacacaaaattggtattgggtctcctagatattgtgtgaaccacttgcttacattatagttcgatagaaaagttagataaactcatgctaacaacccact |
8237197 |
T |
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| Q |
307 |
ttatcccttcctataatccccttgtttccgccccatgaggttgtgataaacgttgaaaccacgctgttctcgccctta |
384 |
Q |
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| T |
8237196 |
ttattacttcctttaatccccttgtttccgcctcatgaggttgtggtaaaccttgaaaccatgttattctagccctta |
8237119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 5460992 - 5460922
Alignment:
| Q |
106 |
ctagctaacaagtcgggaaccttatttgcttgtc--ctaatgaaacttatcttaaaactttggtaaattct |
174 |
Q |
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| T |
5460992 |
ctagctaacaagtcagcaacaatatttgcttgtctcctaatgaaacttatcttaaagttttggtaaattct |
5460922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 23270175 - 23270084
Alignment:
| Q |
70 |
tcatgaacatgggaaacaacataagatattgtcatcctagctaacaagtcgggaaccttatttgcttgtc--ctaatgaaacttatcttaaa |
159 |
Q |
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| T |
23270175 |
tcatgaacttgggaactagcataagataatgactccctagctaacaagtgagcaacattatttgcttgtcttctaatgaaacttatcttaaa |
23270084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 13923053 - 13923009
Alignment:
| Q |
138 |
tcctaatgaaacttatcttaaaactttggtaaattctaagtgaag |
182 |
Q |
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| T |
13923053 |
tcctaatgaaacttatcttaaagttttggtagattctaagtgaag |
13923009 |
T |
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