View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768-Insertion-14 (Length: 359)
Name: NF4768-Insertion-14
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768-Insertion-14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 359
Target Start/End: Complemental strand, 31904814 - 31904462
Alignment:
| Q |
7 |
aaaaagtgattaacacttttacaatctttgcattttcccaaacaagttattcatcgatcgtgctctctcaaacagagagctcgatctaaacaaccaccac |
106 |
Q |
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| T |
31904814 |
aaaaagtgattaacacttttacaatctttgcattttcccaaacaagttattcatcgatcgtgctctctcaaacagagagctcgatctaaacaaccaccac |
31904715 |
T |
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| Q |
107 |
cgccgcgaatgtcggatatcgaacaggcagcagcgccagctccggcagatgctaccaccgcactcttcggcaaatacgagctcggcaaactcctaggatg |
206 |
Q |
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| T |
31904714 |
caccgcgaatgtcggatatcgaacaggcagcagcgccagctccggcagatgctaccaccgcactcttcggcaaatacgagctcggaaaactcctaggatg |
31904615 |
T |
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| Q |
207 |
tggcgcgtttgcgaaagtataccacgcgcggaacaccgagaatggacagagcgtggctgtgaaagtgatcaacaagaagaaaatcaccgcaactggactc |
306 |
Q |
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| T |
31904614 |
tggcgcgtttgcgaaagtataccacgcgcggaacaccgagaatggacagagcgtggctgtgaaagtgatcaacaagaagaaaatctccgcaacaggactc |
31904515 |
T |
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| Q |
307 |
gctgcacatgtgaaacgtgaaatttcaattatgagtaagcttcgtcatccgaa |
359 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31904514 |
gctggacatgtgaaacgtgaaatttcaattatgagtaagcttcgtcatccgaa |
31904462 |
T |
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