View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4768-Insertion-15 (Length: 357)
Name: NF4768-Insertion-15
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768-Insertion-15 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 8994031 - 8994189
Alignment:
| Q |
10 |
tatgatagatacactttacttcaacatcaataatcttaacaaaccaatttactccaactttcgtggagtataactgttgtgagatcatgaatttcacctg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8994031 |
tatgatagatacactttacttcaacatcaataatcttaacaaaccaatttactccaactttcgtggagtataactgttgtgagatcatgaatttcacctg |
8994130 |
T |
|
| Q |
110 |
gtgagtcatccttaatacatttatataatatattcctcgtttcttcgattaaaagatat |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8994131 |
gtgagtcatccttaatacatttatataatatattcctcgtttcttcgattaaaagatat |
8994189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 9028688 - 9028846
Alignment:
| Q |
10 |
tatgatagatacactttacttcaacatcaataatcttaacaaaccaatttactccaactttcgtggagtataactgttgtgagatcatgaatttcacctg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9028688 |
tatgatagatacactttacttcaacatcaataatcttaacaaaccaatttactccaactttcgtggagtataactgttgtgagatcatgaatttcacctg |
9028787 |
T |
|
| Q |
110 |
gtgagtcatccttaatacatttatataatatattcctcgtttcttcgattaaaagatat |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9028788 |
gtgagtcatccttaatacatttatataatatattcctcgtttcttcgattaaaagatat |
9028846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 236 - 357
Target Start/End: Original strand, 8994203 - 8994324
Alignment:
| Q |
236 |
acgcagattgttcctgttcttctcaaaaccagatactgatgtttccatgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaac |
335 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8994203 |
acgcagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaa |
8994302 |
T |
|
| Q |
336 |
tcagggattctctctcatgttg |
357 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
8994303 |
tcagggattctctctcgtgttg |
8994324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 236 - 357
Target Start/End: Original strand, 9028860 - 9028981
Alignment:
| Q |
236 |
acgcagattgttcctgttcttctcaaaaccagatactgatgtttccatgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaac |
335 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9028860 |
acgcagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaa |
9028959 |
T |
|
| Q |
336 |
tcagggattctctctcatgttg |
357 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
9028960 |
tcagggattctctctcgtgttg |
9028981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 9019286 - 9019349
Alignment:
| Q |
10 |
tatgatagatacactttacttcaacatcaataatcttaacaaaccaatttactccaactttcgt |
73 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9019286 |
tatgatagatacacgttacttcaacatcaataatcttcacaaaccaatttactccaactttcgt |
9019349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 9019407 - 9019458
Alignment:
| Q |
222 |
ccttctccttctcgacgcagattgttcctgttcttctcaaaaccagatactg |
273 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||| |||||||||||||||||| |
|
|
| T |
9019407 |
ccttccccttctcgactcagattgttcatgttcatctcaaaaccagatactg |
9019458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 189 - 357
Target Start/End: Complemental strand, 44884348 - 44884174
Alignment:
| Q |
189 |
atgataaaagagtatgatcatttgtcgtcaaacccttctccttc------tcgacgcagattgttcctgttcttctcaaaaccagatactgatgtttcca |
282 |
Q |
| |
|
|||||| | |||||||||| |||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
44884348 |
atgatagatgagtatgatcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttcca |
44884249 |
T |
|
| Q |
283 |
tgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaactcagggattctctctcatgttg |
357 |
Q |
| |
|
|||| |||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
44884248 |
tgggaaatggtcacttttataatcatgcatggtttgtggaagctctcaacaactcagggattctgtctcgtgttg |
44884174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University