View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768-Insertion-18 (Length: 180)
Name: NF4768-Insertion-18
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768-Insertion-18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 47404101 - 47404275
Alignment:
| Q |
6 |
cagtaactagcttgcaatctagttctatcaacacatttgacatccccatttcatcaagccaaatcgtaacttccttgagtccccatgtttctgcttccat |
105 |
Q |
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| T |
47404101 |
cagtaaccagcttgcaatctagttctatcgacacatttaacatccccatttcatcaagccaaatcgtagcttccttgagtccccatgtttctgcttccat |
47404200 |
T |
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| Q |
106 |
tggagtgggtacaccatcataccaagctgttcttgcttttataaaatgacctctagaatcacttagtgcacgtac |
180 |
Q |
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| T |
47404201 |
tggattgggtacaccatcataccaagctgtccttgcttttataaaatgacctctagaatcacttagtgcacgtac |
47404275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 40316246 - 40316085
Alignment:
| Q |
6 |
cagtaactagcttgcaatctagttctatcaacacatttgacatccccatttcatcaagccaaatcgtaacttccttgagtccccatgtttctgcttccat |
105 |
Q |
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| T |
40316246 |
cagtcactagtttgcaatctagttcaattgacacatttggcgtccccatttcaccaagccaaagaatagcctccttgagtccctatgcttccgcttccat |
40316147 |
T |
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| Q |
106 |
tggagtgggtacaccatcataccaagctgttcttgcttttataaaatgacctctagaatcac |
167 |
Q |
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| T |
40316146 |
tggagtaggtacaccatcaaaccaagctatcaaagcttttataaagtggcctctataatcac |
40316085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 22619522 - 22619373
Alignment:
| Q |
11 |
actagcttgcaatctagttctatcaacacatttgacatccccatttcatcaagccaaatcgtaacttccttgagtccccatgtttctgcttccattggag |
110 |
Q |
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| T |
22619522 |
actagtttgcaatctagttcaattgtcacatttgacatccccatttcaccaagccaaagaatagcctccttgagtccccatgcttctgcttccattggag |
22619423 |
T |
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| Q |
111 |
tgggtacaccatcataccaagctgttcttgcttttataaaatgacctcta |
160 |
Q |
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| T |
22619422 |
taggtacaccatcaaaccaagttgtcttagcttttacaaagtggcctcta |
22619373 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 45581490 - 45581425
Alignment:
| Q |
90 |
atgtttctgcttccattggagtgggtacaccatcataccaagctgttcttgcttttataaaatgac |
155 |
Q |
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| T |
45581490 |
atgtttccgcttgcattggagaaggtacaccgtcataccaagttgtccttgcttttattaaatgac |
45581425 |
T |
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