View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4768-Insertion-20 (Length: 115)

Name: NF4768-Insertion-20
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4768-Insertion-20
NF4768-Insertion-20
[»] chr6 (7 HSPs)
chr6 (8-115)||(33638267-33638374)
chr6 (58-115)||(33638381-33638438)
chr6 (57-115)||(26499722-26499780)
chr6 (57-115)||(30355498-30355556)
chr6 (57-114)||(15575106-15575163)
chr6 (57-114)||(17860324-17860381)
chr6 (71-115)||(24618064-24618108)
[»] chr3 (11 HSPs)
chr3 (57-115)||(19219086-19219144)
chr3 (66-115)||(10341968-10342017)
chr3 (57-114)||(25883285-25883342)
chr3 (58-113)||(1475156-1475211)
chr3 (57-115)||(18474351-18474409)
chr3 (57-115)||(19542999-19543057)
chr3 (60-115)||(11475028-11475083)
chr3 (57-111)||(11521350-11521404)
chr3 (74-115)||(21829025-21829066)
chr3 (58-113)||(16970645-16970700)
chr3 (57-115)||(19263779-19263840)
[»] chr5 (13 HSPs)
chr5 (53-112)||(7742741-7742800)
chr5 (57-115)||(19763761-19763819)
chr5 (57-115)||(18178283-18178341)
chr5 (71-115)||(11274219-11274263)
chr5 (60-114)||(22229986-22230040)
chr5 (53-114)||(12339886-12339947)
chr5 (57-114)||(18452687-18452744)
chr5 (57-113)||(16634230-16634286)
chr5 (57-115)||(16622552-16622609)
chr5 (73-115)||(20694821-20694863)
chr5 (57-115)||(26329945-26330002)
chr5 (65-115)||(30072297-30072347)
chr5 (71-112)||(17695352-17695393)
[»] chr4 (14 HSPs)
chr4 (58-114)||(31859777-31859833)
chr4 (57-115)||(5906638-5906696)
chr4 (57-115)||(33519211-33519269)
chr4 (57-115)||(21077414-21077472)
chr4 (57-106)||(12111203-12111252)
chr4 (50-115)||(34864164-34864228)
chr4 (57-99)||(1695722-1695764)
chr4 (57-115)||(7024094-7024152)
chr4 (65-115)||(13064607-13064657)
chr4 (57-115)||(17187354-17187412)
chr4 (81-115)||(26159937-26159971)
chr4 (65-114)||(15192385-15192434)
chr4 (71-112)||(46647379-46647420)
chr4 (57-96)||(23353818-23353857)
[»] chr2 (13 HSPs)
chr2 (57-112)||(18818886-18818941)
chr2 (57-112)||(1733275-1733330)
chr2 (57-112)||(16593626-16593681)
chr2 (57-114)||(30998953-30999010)
chr2 (57-114)||(31274138-31274195)
chr2 (58-106)||(22525696-22525744)
chr2 (57-113)||(27417138-27417194)
chr2 (60-115)||(14921917-14921972)
chr2 (57-115)||(31262178-31262236)
chr2 (58-100)||(32619821-32619863)
chr2 (58-115)||(1732732-1732789)
chr2 (71-104)||(17152346-17152379)
chr2 (57-114)||(25474219-25474276)
[»] chr7 (15 HSPs)
chr7 (57-115)||(29544701-29544759)
chr7 (57-115)||(21545702-21545760)
chr7 (53-115)||(30405775-30405837)
chr7 (60-114)||(20446384-20446438)
chr7 (57-114)||(7493495-7493552)
chr7 (70-107)||(8308924-8308961)
chr7 (74-115)||(12358655-12358696)
chr7 (57-106)||(20017143-20017192)
chr7 (58-114)||(20470686-20470742)
chr7 (58-104)||(7494888-7494934)
chr7 (60-106)||(10670453-10670499)
chr7 (71-112)||(14649680-14649721)
chr7 (65-114)||(22067686-22067735)
chr7 (57-113)||(315356-315412)
chr7 (66-114)||(21471978-21472026)
[»] chr1 (15 HSPs)
chr1 (57-115)||(11769869-11769927)
chr1 (57-115)||(25494364-25494422)
chr1 (57-107)||(30675673-30675723)
chr1 (57-115)||(26854195-26854253)
chr1 (57-115)||(52271120-52271178)
chr1 (58-100)||(19257682-19257724)
chr1 (65-115)||(25727792-25727842)
chr1 (65-115)||(25736200-25736250)
chr1 (65-114)||(12423798-12423847)
chr1 (58-114)||(23519645-23519701)
chr1 (58-114)||(30781942-30781998)
chr1 (57-106)||(9328357-9328406)
chr1 (60-105)||(18300881-18300926)
chr1 (71-112)||(27461070-27461111)
chr1 (57-114)||(50047357-50047414)
[»] chr8 (19 HSPs)
chr8 (57-114)||(29291952-29292009)
chr8 (58-115)||(30850976-30851033)
chr8 (59-115)||(28291978-28292034)
chr8 (57-114)||(16054476-16054533)
chr8 (57-110)||(28902275-28902328)
chr8 (60-115)||(13583398-13583453)
chr8 (52-115)||(14424683-14424746)
chr8 (53-115)||(6888064-6888126)
chr8 (57-114)||(13081810-13081867)
chr8 (57-115)||(16052152-16052210)
chr8 (65-115)||(28859122-28859172)
chr8 (57-106)||(22894407-22894456)
chr8 (57-106)||(28901225-28901274)
chr8 (58-106)||(11310132-11310180)
chr8 (65-112)||(12956665-12956712)
chr8 (68-115)||(24696763-24696810)
chr8 (57-100)||(27097677-27097720)
chr8 (71-114)||(28260178-28260221)
chr8 (58-115)||(31436654-31436708)
[»] scaffold0650 (1 HSPs)
scaffold0650 (57-106)||(5645-5694)
[»] scaffold0188 (1 HSPs)
scaffold0188 (53-114)||(26826-26887)
[»] scaffold0011 (1 HSPs)
scaffold0011 (57-114)||(228062-228118)
[»] scaffold0171 (2 HSPs)
scaffold0171 (68-115)||(21579-21626)
scaffold0171 (60-114)||(6377-6431)
[»] scaffold0190 (1 HSPs)
scaffold0190 (57-115)||(11573-11631)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 2e-52; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 33638374 - 33638267
Alignment:
Q  8 atgtatgcatctattgaatttattattaaatattgtattgggtttaaacgaattttattcactttgtattatcttcaaagaccttctaagaaccattgat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33638374 atgtatgcatctattgaatttattattaaatattgtattgggtttaaacgaattttattcactttgtattatcttcaaagaccttataagaaccattgat 33638275  T
Q  108 cttcaatc 115  Q
    ||||||||    
T  33638274 cttcaatc 33638267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 33638381 - 33638438
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33638381 aattttattcactttgtattatcttcaaagaccttataagaaccattgatcttcaatc 33638438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 26499722 - 26499780
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| || |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  26499722 gaattttctttactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatc 26499780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 30355556 - 30355498
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||||||||||||||| |||| |||||||| ||||||||||||| ||||||||||||||    
T  30355556 gaattttattcactttttattgtcttcaaaaaccttctaagaacgattgatcttcaatc 30355498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 15575163 - 15575106
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||    
T  15575163 gaattttcttcactttgtattgtcttcaacgaccttctaagaacccttgatcttcaat 15575106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 17860324 - 17860381
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| ||||||||||||| ||| |||| ||||||||||||||||||  |||||||    
T  17860324 gaattttcttcactttgtattgtctacaaaaaccttctaagaaccattgtccttcaat 17860381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 24618108 - 24618064
Alignment:
Q  71 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| |||| ||||| |||||||||| |||||||||||||||    
T  24618108 ttgtattgtctttaaagatcttctaagaatcattgatcttcaatc 24618064  T

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Target: chr3 (Bit Score: 51; Significance: 1e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 19219086 - 19219144
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  19219086 gaattttattcactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatc 19219144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 10342017 - 10341968
Alignment:
Q  66 tcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  10342017 tcactttgtattgtcttcaaaaaccttctaagaaccactgatcttcaatc 10341968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 25883342 - 25883285
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  25883342 gaattttcttcactttgtattgtcttcaacaaccttctaagaacccttgatcttcaat 25883285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 1475156 - 1475211
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaa 113  Q
    |||||| |||||||||||||||||||||  |||||||||||||  |||||||||||    
T  1475156 aattttcttcactttgtattatcttcaataaccttctaagaactcttgatcttcaa 1475211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 18474409 - 18474351
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||||||||||| |||||||| |||||||||| ||||||||  |||||||    
T  18474409 gaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaaattcaatc 18474351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 19542999 - 19543057
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||| |||||  |||||||    
T  19542999 gaattttcttcactttgtattgtcttcaaataccttctaagaactattgaaattcaatc 19543057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 11475083 - 11475028
Alignment:
Q  60 ttttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||| ||||||||||||| |||||||| | ||||||||||||||| ||||| ||||    
T  11475083 tttttttcactttgtattgtcttcaaatatcttctaagaaccatttatcttgaatc 11475028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 11521404 - 11521350
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttc 111  Q
    ||||||| ||| |||||||||||||||||  ||||||||| |||| |||||||||    
T  11521404 gaattttcttcgctttgtattatcttcaacaaccttctaacaacccttgatcttc 11521350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 21829025 - 21829066
Alignment:
Q  74 tattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||| ||||||||||||||| | |||||||||||||||||||    
T  21829025 tattgtcttcaaagaccttcgatgaaccattgatcttcaatc 21829066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 16970700 - 16970645
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaa 113  Q
    |||||| ||||  ||||||| |||||||| |||||||||||||| ||| |||||||    
T  16970700 aattttcttcatcttgtattttcttcaaaaaccttctaagaaccgttggtcttcaa 16970645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 19263779 - 19263840
Alignment:
Q  57 gaattttattcactttgtattatcttcaaaga---ccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||||||||||| |||| ||| |   ||||||| |||||||||||||||||||    
T  19263779 gaattttcttcactttgtattgtcttaaaaaaaaaccttctatgaaccattgatcttcaatc 19263840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 6e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 7742741 - 7742800
Alignment:
Q  53 aaacgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttca 112  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7742741 aaacgatttttcttcactttgtattgtcttcaaagaccttctaagaaccattgatcttca 7742800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 19763761 - 19763819
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  19763761 gaattttcttcactttgtattatcttcaaaaaccttctaagaacccttgatcttcaatc 19763819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 18178341 - 18178283
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||||||||||| |||||||||||||||||||||||| |||||| |||| |||||||||    
T  18178341 gaattttattcaatttgtattatcttcaaagaccttccaagaacaattggtcttcaatc 18178283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 11274219 - 11274263
Alignment:
Q  71 ttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||    
T  11274219 ttgtattgtcttcaaagaccttctaagaaccattggtcttcaatc 11274263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 22230040 - 22229986
Alignment:
Q  60 ttttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    |||| ||||||| |||||||||||||  |||||||||||||| ||||||||||||    
T  22230040 ttttcttcacttggtattatcttcaacaaccttctaagaacccttgatcttcaat 22229986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 12339886 - 12339947
Alignment:
Q  53 aaacgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    |||||||| ||  |||||||||||| ||||||| ||||||||||||||| ||||| ||||||    
T  12339886 aaacgaatgtttctcactttgtattgtcttcaacgaccttctaagaacccttgattttcaat 12339947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 18452687 - 18452744
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| ||||||||||||| | || ||| ||||| |||||||||||||||||||||    
T  18452687 gaattttcttcactttgtattgttttaaaaaaccttataagaaccattgatcttcaat 18452744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 16634286 - 16634230
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaa 113  Q
    ||||||| ||||  ||||||| |||||||| |||||||||||||||||| |||||||    
T  16634286 gaatttttttcatcttgtattttcttcaaaaaccttctaagaaccattggtcttcaa 16634230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 16622552 - 16622609
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| |||| |||||||| |||||||| ||||||||||||||| || |||||||||    
T  16622552 gaattttcttcaatttgtattgtcttcaaa-accttctaagaaccactggtcttcaatc 16622609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 20694863 - 20694821
Alignment:
Q  73 gtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||    
T  20694863 gtattgtcttcaaataccttctaagaaccatttatcttcaatc 20694821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 26329945 - 26330002
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||||||||||| |||| ||| |||||||||| |||||||| ||||||||    
T  26329945 gaattttcttcactttgtattgtcttaaaaaaccttctaaggaccattga-cttcaatc 26330002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 30072347 - 30072297
Alignment:
Q  65 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||||||||| |||| ||| ||||| ||||||||||| ||||||||||    
T  30072347 ttcactttgtattgtctttaaaaaccttttaagaaccattaatcttcaatc 30072297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 17695352 - 17695393
Alignment:
Q  71 ttgtattatcttcaaagaccttctaagaaccattgatcttca 112  Q
    ||||||| |||||||| ||||||||| |||||||||||||||    
T  17695352 ttgtattgtcttcaaaaaccttctaataaccattgatcttca 17695393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 31859777 - 31859833
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  31859777 aattttcttcactttgtattgtcttcaaataccttctaagaaccattgatcttcaat 31859833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 5906638 - 5906696
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| || ||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  5906638 gaattttcttaactttgtattatcttcaaaaaccttctaagaaccattaatcttaaatc 5906696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 33519269 - 33519211
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||  ||||||| |||||||||||||||||||||| ||||||||||||||    
T  33519269 gaattttcttcaacttgtattgtcttcaaagaccttctaagaacgattgatcttcaatc 33519211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 21077472 - 21077414
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||||||||||| |||||||| ||||| |  |||||||||||||||||||| |||||||    
T  21077472 gaattttattcaatttgtattgtcttcgattaccttctaagaaccattgatattcaatc 21077414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 12111203 - 12111252
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattga 106  Q
    ||||||| |||||||||||||||||| ||| ||||| |||||||||||||    
T  12111203 gaattttcttcactttgtattatcttaaaaaaccttataagaaccattga 12111252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 34864164 - 34864228
Alignment:
Q  50 tttaaacgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||||| ||||||| |||| |||||||| ||| |||| ||||||||||||||||||| ||||||||    
T  34864164 tttaaatgaattttcttcattttgtattgtctacaaaaaccttctaagaaccattga-cttcaatc 34864228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 1695722 - 1695764
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaa 99  Q
    ||||||||||||||||||||| |||||||  ||||||||||||    
T  1695722 gaattttattcactttgtattgtcttcaacaaccttctaagaa 1695764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 7024094 - 7024152
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||  |||||||||||||||  | |||||||||||||||| |||||||||    
T  7024094 gaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatc 7024152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 13064657 - 13064607
Alignment:
Q  65 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||||| ||| |||||||| ||| ||||||||||||||| ||||||||    
T  13064657 ttcactttgaattgtcttcaaataccctctaagaaccattgaacttcaatc 13064607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 17187412 - 17187354
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| || |||||||||| |||||||| | ||||||||||||| ||| ||||||||    
T  17187412 gaattttctttactttgtattgtcttcaaataacttctaagaaccactgaacttcaatc 17187354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 26159971 - 26159937
Alignment:
Q  81 ttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||||||||||| ||||||||||||||||||||||    
T  26159971 ttcaaagaccttataagaaccattgatcttcaatc 26159937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 15192434 - 15192385
Alignment:
Q  65 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||||| ||| |||||||  |||||||||||||||||| ||||||||    
T  15192434 ttcactttgaattgtcttcaacaaccttctaagaaccattggtcttcaat 15192385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 46647420 - 46647379
Alignment:
Q  71 ttgtattatcttcaaagaccttctaagaaccattgatcttca 112  Q
    |||||||||||| ||| ||||| |||||||||||||||||||    
T  46647420 ttgtattatctttaaaaaccttttaagaaccattgatcttca 46647379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 23353857 - 23353818
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaa 96  Q
    ||||||| ||||||||||||| |||| |||||||||||||    
T  23353857 gaattttcttcactttgtattgtcttaaaagaccttctaa 23353818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 2e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 18818941 - 18818886
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttca 112  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  18818941 gaattttcttcactttgtattgtcttcaaagaccttctaagaaccattaatcttca 18818886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 1733330 - 1733275
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttca 112  Q
    |||||||||||||||||||||||||||||  || ||||||||||  ||||||||||    
T  1733330 gaattttattcactttgtattatcttcaacaacattctaagaactcttgatcttca 1733275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 16593626 - 16593681
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttca 112  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||| ||||||||||    
T  16593626 gaattttcttcactttgtattgtcttcaacaaccttctaagaacccttgatcttca 16593681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 30999010 - 30998953
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| | ||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  30999010 gaattttctccactttgtattgtcttcaacaaccttctaagaacccttgatcttcaat 30998953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 31274195 - 31274138
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| ||||  || |||| |||||||||||||||||||||||||| |||||||||    
T  31274195 gaattttcttcaacttatattgtcttcaaagaccttctaagaaccattaatcttcaat 31274138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 22525696 - 22525744
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccattga 106  Q
    |||||| |||||||||| || |||||||| |||||||||||||||||||    
T  22525696 aattttcttcactttgtgttgtcttcaaataccttctaagaaccattga 22525744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 27417138 - 27417194
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaa 113  Q
    ||||||| ||||||||||||| | |||||| ||||||| |||||||||| |||||||    
T  27417138 gaattttcttcactttgtattgttttcaaaaaccttcttagaaccattggtcttcaa 27417194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 14921917 - 14921972
Alignment:
Q  60 ttttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||| ||||||||||||| ||| || | ||||||||||||||||||| ||||||||    
T  14921917 ttttcttcactttgtattgtctacatataccttctaagaaccattgaacttcaatc 14921972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 31262236 - 31262178
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||  || |||| ||||||||||||| |||||||||||| ||||||||||    
T  31262236 gaattttcttcaacttatattgtcttcaaagacctactaagaaccattaatcttcaatc 31262178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 32619863 - 32619821
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaac 100  Q
    |||||||||||||||||||| |||||||| ||||||| |||||    
T  32619863 aattttattcactttgtattgtcttcaaaaaccttcttagaac 32619821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 1732789 - 1732732
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||||||| ||||||||  ||||||| |  ||||||||| |||||||||||||||    
T  1732789 aattttattcattttgtattgccttcaaatatattctaagaatcattgatcttcaatc 1732732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 17152379 - 17152346
Alignment:
Q  71 ttgtattatcttcaaagaccttctaagaaccatt 104  Q
    |||||||||||||||| |||||||||||||||||    
T  17152379 ttgtattatcttcaaaaaccttctaagaaccatt 17152346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 25474276 - 25474219
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| |||||||| |||| |||||||  |||||||||||||| |||| |||||||    
T  25474276 gaattttcttcactttatattgtcttcaacaaccttctaagaacccttgaccttcaat 25474219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 6e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 29544759 - 29544701
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  29544759 gaattttcttcactttgtattgtcttcaaaaaccttctaagaatcattgatcttcaatc 29544701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 21545702 - 21545760
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| |||||||| |||| |||||||| || |||||||||||||||||||||||||    
T  21545702 gaattttcttcactttttattgtcttcaaatactttctaagaaccattgatcttcaatc 21545760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 30405837 - 30405775
Alignment:
Q  53 aaacgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||||| ||||||||||||||| | |||||| |||||||||||| |||||| ||||||||    
T  30405837 aaacgaattgtattcactttgtattgtattcaaataccttctaagaatcattgaacttcaatc 30405775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 20446438 - 20446384
Alignment:
Q  60 ttttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    |||| ||||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  20446438 tttttttcactttgtattgtcttcaacaaccttctaagaacccttgatcttcaat 20446384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 7493552 - 7493495
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| |||| ||||||||||||||||  ||||| |||||||| ||||||||||||    
T  7493552 gaatttttttcattttgtattatcttcaataaccttttaagaacccttgatcttcaat 7493495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 8308924 - 8308961
Alignment:
Q  70 tttgtattatcttcaaagaccttctaagaaccattgat 107  Q
    |||||||| |||||||||||||||||||||||||||||    
T  8308924 tttgtattgtcttcaaagaccttctaagaaccattgat 8308961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 12358655 - 12358696
Alignment:
Q  74 tattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||| |||||||| ||||||||||||||||||||||||||||    
T  12358655 tattgtcttcaaaaaccttctaagaaccattgatcttcaatc 12358696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 20017192 - 20017143
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattga 106  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||||||    
T  20017192 gaattttcttcactttgtattgtcttcaagaaccttctaagaaccattga 20017143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 20470686 - 20470742
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    |||||| |||| |||||||| |||||||  ||||||||||||||||||| |||||||    
T  20470686 aattttcttcattttgtattgtcttcaagaaccttctaagaaccattgaacttcaat 20470742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 7494934 - 7494888
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccatt 104  Q
    |||||| ||||||||||||| ||||||  ||||||||||||||||||    
T  7494934 aattttcttcactttgtattgtcttcatggaccttctaagaaccatt 7494888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 10670453 - 10670499
Alignment:
Q  60 ttttattcactttgtattatcttcaaagaccttctaagaaccattga 106  Q
    |||||||||||||||||| ||||  || |||||||||||||||||||    
T  10670453 ttttattcactttgtattgtcttagaaaaccttctaagaaccattga 10670499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 14649721 - 14649680
Alignment:
Q  71 ttgtattatcttcaaagaccttctaagaaccattgatcttca 112  Q
    ||||||| |||||||| ||||||||| |||||||||||||||    
T  14649721 ttgtattgtcttcaaaaaccttctaataaccattgatcttca 14649680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 22067686 - 22067735
Alignment:
Q  65 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||||||||| |||||||  |||||||||||||| ||||| ||||||    
T  22067686 ttcactttgtattgtcttcaacaaccttctaagaacccttgattttcaat 22067735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 315412 - 315356
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaa 113  Q
    ||||||||||||||||||||| |||||||  |||||| ||||||  ||| |||||||    
T  315412 gaattttattcactttgtattgtcttcaacaaccttcaaagaactgttgttcttcaa 315356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 21472026 - 21471978
Alignment:
Q  66 tcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    |||||||||||| |||||||  |||||||||||||| || |||||||||    
T  21472026 tcactttgtattttcttcaataaccttctaagaaccctttatcttcaat 21471978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 6e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 11769869 - 11769927
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  11769869 gaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatc 11769927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 25494364 - 25494422
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  25494364 gaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatc 25494422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 30675723 - 30675673
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgat 107  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  30675723 gaattttcttcactttgtattatcttcaaaaaccttctaagaaccattgat 30675673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 26854195 - 26854253
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||||||||||| |||||||| | ||||||||||||||||| ||||||||    
T  26854195 gaattttcttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatc 26854253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 52271120 - 52271178
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||||||||||| |||||||| |||||||||| |||||||| ||||||||    
T  52271120 gaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaacttcaatc 52271178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 19257682 - 19257724
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaac 100  Q
    |||||| ||||||||||||| ||||||||||||||||||||||    
T  19257682 aattttcttcactttgtattgtcttcaaagaccttctaagaac 19257724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 25727792 - 25727842
Alignment:
Q  65 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||||| ||| |||||||| |||||| |||||||||||||||||||||    
T  25727792 ttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatc 25727842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 25736200 - 25736250
Alignment:
Q  65 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||||| ||| |||||||| |||||| |||||||||||||||||||||    
T  25736200 ttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatc 25736250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 12423798 - 12423847
Alignment:
Q  65 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  12423798 ttcactttgtattgtcttcaacaaccttctaagaacctttgatcttcaat 12423847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 23519645 - 23519701
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    |||||| |||||||| |||| |||||||  |||||||||||||||||| ||||||||    
T  23519645 aattttcttcactttctattgtcttcaacaaccttctaagaaccattggtcttcaat 23519701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 30781998 - 30781942
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    |||||| ||||||||||||| |||||||  ||||| |||||||| ||||||||||||    
T  30781998 aattttcttcactttgtattgtcttcaacaaccttttaagaacccttgatcttcaat 30781942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 9328406 - 9328357
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattga 106  Q
    ||||||| ||||||| ||||| |||||||| ||||||||||||| |||||    
T  9328406 gaattttcttcacttagtattgtcttcaaaaaccttctaagaacgattga 9328357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 18300881 - 18300926
Alignment:
Q  60 ttttattcactttgtattatcttcaaagaccttctaagaaccattg 105  Q
    |||| |||||| |||||| |||||||| ||||||||||||||||||    
T  18300881 ttttcttcactctgtattgtcttcaaaaaccttctaagaaccattg 18300926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 27461070 - 27461111
Alignment:
Q  71 ttgtattatcttcaaagaccttctaagaaccattgatcttca 112  Q
    ||||||| |||||||| ||||| |||||||||||||||||||    
T  27461070 ttgtattgtcttcaaaaaccttttaagaaccattgatcttca 27461111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 50047414 - 50047357
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| |||| |||||||| |||||||  ||||| |||| ||||||||||||||||    
T  50047414 gaattttcttcattttgtattgtcttcaataaccttttaagtaccattgatcttcaat 50047357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 29292009 - 29291952
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| |||||||| | || ||||||||||||||||||||||||||||||||||||    
T  29292009 gaatttttttcactttctgttgtcttcaaagaccttctaagaaccattgatcttcaat 29291952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 30850976 - 30851033
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  30850976 aattttcttcactttgtattatattcaaagacattctaagaaccgttgatcttcaatc 30851033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 28291978 - 28292034
Alignment:
Q  59 attttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||    
T  28291978 attttcttcattttgtattgtcttcaaagaccttctaagaaccattaatcttcaatc 28292034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 16054533 - 16054476
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  16054533 gaattttcttcactttgtattttcttcaacaaccttctaagaacccttgatcttcaat 16054476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 28902328 - 28902275
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatctt 110  Q
    ||||||||||||||||||||| |||||||  |||||||||||||||||| ||||    
T  28902328 gaattttattcactttgtattgtcttcaataaccttctaagaaccattggtctt 28902275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 13583398 - 13583453
Alignment:
Q  60 ttttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||| ||||||||||||| |||||||| | ||||||||||||||||| ||||||||    
T  13583398 tttttttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatc 13583453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 14424683 - 14424746
Alignment:
Q  52 taaacgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||| ||||||| ||||| ||| ||| | |||||| ||||||||||||||||||||||||||||    
T  14424683 taaatgaattttcttcacattgaattgtgttcaaaaaccttctaagaaccattgatcttcaatc 14424746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 6888064 - 6888126
Alignment:
Q  53 aaacgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||| ||||| ||||  ||||||| ||||||||||| || ||||||||||||||||||||||    
T  6888064 aaacggattttcttcaacttgtattgtcttcaaagacattttaagaaccattgatcttcaatc 6888126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 13081810 - 13081867
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| |||| |||||||| |||||||  |||||||||||||| ||||||||||||    
T  13081810 gaattttcttcattttgtattgtcttcaacaaccttctaagaacccttgatcttcaat 13081867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 16052152 - 16052210
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| |||| |||||||| |||||||| |||||||||||| ||||| |||| ||||    
T  16052152 gaattttcttcattttgtattgtcttcaaaaaccttctaagaatcattggtctttaatc 16052210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 28859122 - 28859172
Alignment:
Q  65 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||||||| |||| |||||||| ||| ||||||||||||||||||| ||||    
T  28859122 ttcactttttattgtcttcaaaaaccatctaagaaccattgatctttaatc 28859172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 22894407 - 22894456
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattga 106  Q
    ||||||| ||||||||||||| |||||||| ||| ||||||||| |||||    
T  22894407 gaattttcttcactttgtattgtcttcaaaaaccatctaagaacaattga 22894456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 28901225 - 28901274
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattga 106  Q
    ||||||| ||||||||||||| |||||| | ||||| |||||||||||||    
T  28901225 gaattttcttcactttgtattgtcttcagaaaccttataagaaccattga 28901274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 11310132 - 11310180
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccattga 106  Q
    |||||| ||||||||||||| | |||||| |||||||||||| ||||||    
T  11310132 aattttcttcactttgtattgttttcaaaaaccttctaagaatcattga 11310180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 12956712 - 12956665
Alignment:
Q  65 ttcactttgtattatcttcaaagaccttctaagaaccattgatcttca 112  Q
    |||||||||||||||||| ||| |||||| || ||| |||||||||||    
T  12956712 ttcactttgtattatcttaaaaaaccttccaaaaacaattgatcttca 12956665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 24696810 - 24696763
Alignment:
Q  68 actttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||||||||| |||||||| ||||||||||||| | || |||||||||    
T  24696810 actttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatc 24696763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 27097677 - 27097720
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaac 100  Q
    ||||||| ||||  ||||||| ||||||||||||||||||||||    
T  27097677 gaattttcttcaacttgtattgtcttcaaagaccttctaagaac 27097720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 28260178 - 28260221
Alignment:
Q  71 ttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    |||||||||||||||| || || ||||||| |||||||||||||    
T  28260178 ttgtattatcttcaaaaactttataagaactattgatcttcaat 28260221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 31436708 - 31436654
Alignment:
Q  58 aattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||||| ||||||||||||| |||||||| ||   |||||||||||||||| ||||||    
T  31436708 aatttttttcactttgtattgtcttcaaatac---ctaagaaccattgatcgtcaatc 31436654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 5645 - 5694
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattga 106  Q
    ||||||| ||||||||||||| |||| |||||||||||||||||||||||    
T  5645 gaattttcttcactttgtattttctttaaagaccttctaagaaccattga 5694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 26826 - 26887
Alignment:
Q  53 aaacgaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||||||| ||||||||||||| |||||||  || |||||||||||||||| |||||||    
T  26826 aaacgaattttcttcactttgtattgtcttcaagaactttctaagaaccattgaacttcaat 26887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 228062 - 228118
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||||||    
T  228062 gaattttcttcactttgtattgtcttcaaataccttctaagaaccattg-tcttcaat 228118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 36; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 21626 - 21579
Alignment:
Q  68 actttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  21626 actttgtattgtctttaaaaaccttctaagaaccattgatcttcaatc 21579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 6431 - 6377
Alignment:
Q  60 ttttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaat 114  Q
    |||| ||||||||||||| |||||||| | |||||| ||||||||| ||||||||    
T  6431 ttttcttcactttgtattttcttcaaaaatcttctaggaaccattggtcttcaat 6377  T

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Target: scaffold0190 (Bit Score: 35; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 11573 - 11631
Alignment:
Q  57 gaattttattcactttgtattatcttcaaagaccttctaagaaccattgatcttcaatc 115  Q
    ||||||| ||||||||||||| |||||||| ||||| |||||| ||||||| |||||||    
T  11573 gaattttcttcactttgtattgtcttcaaataccttataagaatcattgatattcaatc 11631  T

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