View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768-Insertion-22 (Length: 68)
Name: NF4768-Insertion-22
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768-Insertion-22 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 51; Significance: 5e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-21
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 48680795 - 48680853
Alignment:
| Q |
10 |
taagactcaaatcctctttcacattcctcactcttattcttcgtgttcccttatttgtc |
68 |
Q |
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| T |
48680795 |
taagactggaatcctctttcacattcctcactcttattcttcgtgttcccttatttgtc |
48680853 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 48693641 - 48693692
Alignment:
| Q |
10 |
taagactcaaatcctctttcacattcctcactcttattcttcgtgttccctt |
61 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||| |||| |||| |
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| T |
48693641 |
taagactcaaatcctctgtcacattcttcactcttattcttcttgtttcctt |
48693692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 48700946 - 48700993
Alignment:
| Q |
14 |
actcaaatcctctttcacattcctcactcttattcttcgtgttccctt |
61 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
48700946 |
actcaaatcctctatcacattcctcactcttattcttcttgtttcctt |
48700993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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