View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768-Insertion-24 (Length: 318)
Name: NF4768-Insertion-24
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768-Insertion-24 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 36374855 - 36375160
Alignment:
| Q |
13 |
ctgttgaaggtgtaaaggagtttggcacaggatggattgggtgggctggtttgaatgtgcctgatgaagttgggcagaaagctttgactaaagctttatc |
112 |
Q |
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| T |
36374855 |
ctgttgaaggtgtaaaggagtttgacacaagatggattgggtgggctggtttgaatgtgcctgatgaagttgggcagaaagctttgactaaagctttatc |
36374954 |
T |
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| Q |
113 |
tgaaatggtattcaatattgtttatttcatggttgaagtttgtgaaaatttagtaattcagaagcatgaagattcttataatttgtagctttaatttagt |
212 |
Q |
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| T |
36374955 |
tgaaatggtattcaatattgtttatttcatggttgaagtttgtgaaaatttagtaattcagaagcatgaagattcttatagtttgtagctttaatttagt |
36375054 |
T |
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| Q |
213 |
tatgcatttgttaactgcagcgatgcatcccagtgtttcttgacgaggaagtagttaatgagtactataatggctattgcaacaacatcttgtggccact |
312 |
Q |
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| T |
36375055 |
tatgcatttgttaactgcagcgatgcatcccagtgtttcttgacgaggaagtagttaatgagtactataatggctattgcaacaacatcttgtggccact |
36375154 |
T |
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| Q |
313 |
atttca |
318 |
Q |
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|||||| |
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| T |
36375155 |
atttca |
36375160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 31039073 - 31039028
Alignment:
| Q |
273 |
agtactataatggctattgcaacaacatcttgtggccactatttca |
318 |
Q |
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| T |
31039073 |
agtactataatggctattgcaataacattttgtggcccctttttca |
31039028 |
T |
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