View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4768-Insertion-25 (Length: 305)

Name: NF4768-Insertion-25
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4768-Insertion-25
NF4768-Insertion-25
[»] chr4 (2 HSPs)
chr4 (8-185)||(37811561-37811738)
chr4 (184-305)||(37811761-37811882)
[»] chr1 (2 HSPs)
chr1 (54-152)||(52356185-52356283)
chr1 (184-305)||(52357166-52357284)
[»] chr5 (3 HSPs)
chr5 (8-152)||(17209041-17209179)
chr5 (184-305)||(17209436-17209557)
chr5 (8-92)||(17200103-17200181)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 37811561 - 37811738
Alignment:
Q  8 cctgggcgtcaagacgaagaacaggagctttggttctcttattcaactgaggaattttcttcagcttctctgataacaatttctgaatttgtaaagcctt 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37811561 cctgggcgtcaagacgaagaaaaggagctttggttctcttattcaactgaggaattttcttcagcttctctgacaacaatttctgaatttgtaaagcctt 37811660  T
Q  108 cttagcctttgctaaggcatcactactagagaggcttccaagtttatcaccaaatctcctacgttccttctttgcttc 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37811661 cttagcctttgctaaggcatcactactagagaggcttccaagtttatcaccaaatctcctacgttccttctttgcttc 37811738  T

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Target: chr4; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 37811761 - 37811882
Alignment:
Q  184 tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37811761 tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgcttcgatttag 37811860  T
Q  284 acctacctttgctaccctctct 305  Q
    ||||||||| ||||||||||||    
T  37811861 acctaccttagctaccctctct 37811882  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 52356185 - 52356283
Alignment:
Q  54 ctgaggaattttcttcagcttctctgataacaatttctgaatttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagttt 152  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52356185 ctgaggaattttcttcagcttcgctgacaacaatttctgcatttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagttt 52356283  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 52357166 - 52357284
Alignment:
Q  184 tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag 283  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||    |||| |||||  ||| ||||||||||||| ||||||||||    
T  52357166 tccaattcccgatcctcgctatgttctctgtctttcctcttatgcgaggagtatcg---ctccaatgaatcttccctctcttcatcgcgcttcgatttag 52357262  T
Q  284 acctacctttgctaccctctct 305  Q
    ||||||||||||||||||||||    
T  52357263 acctacctttgctaccctctct 52357284  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 17209041 - 17209179
Alignment:
Q  8 cctgggcgtcaagacgaagaacaggagctttggttctcttattcaactgaggaattttcttcagcttctctgataacaatttctgaatttgtaaagcctt 107  Q
    ||||||||||||||||||||| |||||| ||||||   ||      |||||||||||||||| |||||| |||||| |||||||| ||||||||||||||    
T  17209041 cctgggcgtcaagacgaagaaaaggagccttggttggttt------ctgaggaattttcttcggcttctatgataataatttctgcatttgtaaagcctt 17209134  T
Q  108 cttagcctttgctaaggcatcactactagagaggcttccaagttt 152  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  17209135 cttagcctttgctaaggcatcactactagagaagcttccaagttt 17209179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 17209436 - 17209557
Alignment:
Q  184 tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag 283  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| |||||||| | | || |||||||| |||||||||||| | | | |||||| ||     
T  17209436 tccaattcccggtcctcgctatgttctctatctttcctcttatgcgaggagtattgcggtttcactgaatcctccatctcttcgtagtgcttcgatatat 17209535  T
Q  284 acctacctttgctaccctctct 305  Q
    ||||||||||| ||||||||||    
T  17209536 acctacctttgttaccctctct 17209557  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 17200103 - 17200181
Alignment:
Q  8 cctgggcgtcaagacgaagaacaggagctttggttctcttattcaactgaggaattttcttcagcttctctgataacaatttctg 92  Q
    |||||||||||||||||||||||||||| ||||||   ||      ||||||||||||||||||||||||||| || ||||||||    
T  17200103 cctgggcgtcaagacgaagaacaggagccttggttggttt------ctgaggaattttcttcagcttctctgacaataatttctg 17200181  T

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