View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4768-Insertion-27 (Length: 182)

Name: NF4768-Insertion-27
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4768-Insertion-27
NF4768-Insertion-27
[»] chr1 (18 HSPs)
chr1 (12-181)||(31733698-31733867)
chr1 (48-163)||(36982338-36982453)
chr1 (35-163)||(22022103-22022231)
chr1 (55-134)||(32883620-32883699)
chr1 (61-134)||(16756094-16756167)
chr1 (87-163)||(10841000-10841076)
chr1 (56-160)||(25655315-25655419)
chr1 (97-160)||(17600590-17600653)
chr1 (97-163)||(32534066-32534132)
chr1 (56-134)||(40019253-40019331)
chr1 (52-134)||(46411659-46411741)
chr1 (85-158)||(2732111-2732183)
chr1 (102-163)||(9639648-9639709)
chr1 (102-163)||(10750581-10750642)
chr1 (70-158)||(29124733-29124821)
chr1 (72-124)||(52957436-52957488)
chr1 (76-163)||(17888729-17888816)
chr1 (31-110)||(24801417-24801496)
[»] chr4 (11 HSPs)
chr4 (7-151)||(47023397-47023541)
chr4 (61-155)||(7096087-7096181)
chr4 (61-156)||(35334154-35334249)
chr4 (61-134)||(14854617-14854690)
chr4 (61-134)||(31307122-31307195)
chr4 (35-163)||(38766072-38766200)
chr4 (61-163)||(45994505-45994607)
chr4 (12-163)||(13686584-13686736)
chr4 (56-160)||(56447173-56447277)
chr4 (61-112)||(46016183-46016234)
chr4 (83-134)||(51853710-51853760)
[»] chr7 (14 HSPs)
chr7 (61-163)||(8839337-8839439)
chr7 (61-163)||(19477305-19477407)
chr7 (61-163)||(21747096-21747197)
chr7 (61-163)||(28537373-28537475)
chr7 (61-134)||(29059817-29059890)
chr7 (61-134)||(31492115-31492188)
chr7 (101-161)||(23867409-23867469)
chr7 (56-163)||(7265364-7265471)
chr7 (61-163)||(7190415-7190517)
chr7 (61-163)||(13254157-13254259)
chr7 (102-163)||(20142055-20142116)
chr7 (17-134)||(28828777-28828894)
chr7 (120-161)||(37212596-37212637)
chr7 (76-132)||(18038094-18038150)
[»] chr2 (6 HSPs)
chr2 (63-137)||(37568785-37568859)
chr2 (81-163)||(993737-993819)
chr2 (61-163)||(42745172-42745274)
chr2 (61-126)||(44732629-44732694)
chr2 (61-164)||(5394379-5394481)
chr2 (84-163)||(39401148-39401227)
[»] chr6 (8 HSPs)
chr6 (94-163)||(8507132-8507201)
chr6 (48-155)||(25084025-25084132)
chr6 (61-112)||(12836953-12837004)
chr6 (65-155)||(12411139-12411229)
chr6 (85-163)||(21910188-21910266)
chr6 (48-134)||(28099255-28099341)
chr6 (98-134)||(15614666-15614702)
chr6 (61-160)||(31107549-31107648)
[»] chr8 (11 HSPs)
chr8 (35-163)||(2743916-2744044)
chr8 (79-163)||(40320096-40320180)
chr8 (61-134)||(12958141-12958214)
chr8 (61-161)||(19715782-19715882)
chr8 (71-154)||(27121816-27121899)
chr8 (61-156)||(30056057-30056152)
chr8 (56-163)||(36994551-36994658)
chr8 (61-134)||(4125080-4125153)
chr8 (82-163)||(28377641-28377722)
chr8 (61-134)||(30936016-30936089)
chr8 (70-155)||(35206991-35207076)
[»] chr5 (6 HSPs)
chr5 (35-163)||(30785016-30785144)
chr5 (61-137)||(2804538-2804614)
chr5 (82-163)||(5652904-5652985)
chr5 (61-134)||(10591939-10592012)
chr5 (61-110)||(31113370-31113419)
chr5 (61-137)||(2798371-2798447)
[»] scaffold0182 (1 HSPs)
scaffold0182 (61-134)||(26343-26416)
[»] chr3 (3 HSPs)
chr3 (42-134)||(48204348-48204440)
chr3 (61-163)||(38088618-38088720)
chr3 (84-143)||(1386859-1386918)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 31733698 - 31733867
Alignment:
Q  12 tgtggagactaattcatccagtcttgtgagacccagatggatgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaaccc 111  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  31733698 tgtggagactaattcatccagtcttgtgacacccagatggacgacaaactctccctaagagttttaactctgctgcatgcctaatgctgaattcgaaccc 31733797  T
Q  112 aaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctttcataaatctattacctc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31733798 aaaacattggttaagttagaagaaacatgtgtgatctcatctaaacactctttcataaatctattacctc 31733867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 36982453 - 36982338
Alignment:
Q  48 atggatgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatc 147  Q
    |||||||||||| |||||||| ||||| ||||  || |||||| |||| ||||||||||||||| | || ||||||||  ||||||| || ||||| |||    
T  36982453 atggatgacaaactctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaagagacctgtgtcatc 36982354  T
Q  148 tcatctaaacgctctt 163  Q
    |||||||||| |||||    
T  36982353 tcatctaaactctctt 36982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 22022231 - 22022103
Alignment:
Q  35 ttgtgagacccagatggatgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    ||||| |||||| |||| || |||  |||||||| ||||| |||  |||||||||||| || |||| ||||||||||| ||| || |||||| |||||||    
T  22022231 ttgtgggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgcccaaggctggattcgaacccacaaccttagttaagctagaaga 22022132  T
Q  135 aacatgtgtgatctcatctaaacgctctt 163  Q
     || |||   |||||||||||||||||||    
T  22022131 gacctgttccatctcatctaaacgctctt 22022103  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 32883620 - 32883699
Alignment:
Q  55 acaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    ||||| |||||||| ||||| |||| |||||||||| | ||||||| ||||||||||||||  ||||||||| |||||||    
T  32883620 acaaactctccctaagagttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaaga 32883699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 16756167 - 16756094
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||| ||||| |||| || ||||||||| |||||||||||| |||||| ||| ||||||||| |||||||    
T  16756167 tctccctaagagttttaacgcttctgcatgcccaatgctgaattcaaacccagaaccttggttaagctagaaga 16756094  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 10841076 - 10841000
Alignment:
Q  87 catgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    |||||| || |||||||| ||||||||||  ||||||||| ||||||| || ||| | ||||||||||| |||||||    
T  10841076 catgcccaaggctgaatttgaacccaaaatcttggttaagatagaagagacctgtttcatctcatctaagcgctctt 10841000  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 25655315 - 25655419
Alignment:
Q  56 caaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaa 155  Q
    |||| |||| ||| ||||| ||||  ||||||||||| |||| | |||||||||||| ||| ||| ||||||||||||| |  |||   |||||||||||    
T  25655315 caaactctctctaagagttttaacgttgctgcatgcccaatgttaaattcgaacccagaaccttgattaagttagaagatatttgttccatctcatctaa 25655414  T
Q  156 acgct 160  Q
    |||||    
T  25655415 acgct 25655419  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 17600590 - 17600653
Alignment:
Q  97 gctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    ||||||||| ||||||| || ||||||||| ||||||| ||  |||| ||||||||||||||||    
T  17600590 gctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctcatctaaacgct 17600653  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 32534132 - 32534066
Alignment:
Q  97 gctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    |||||||| ||| ||||||| ||||||||| ||||||||||  |||| || ||||||||||| ||||    
T  32534132 gctgaatttgaatccaaaaccttggttaagctagaagaaacccgtgtcatatcatctaaacgatctt 32534066  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 40019331 - 40019253
Alignment:
Q  56 caaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||| |||||| | ||||| ||||  ||||||||  | || |||||||||||||||||||| ||| |||||||||||||    
T  40019331 caaactctccccaagagttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagttagaaga 40019253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 46411741 - 46411659
Alignment:
Q  52 atgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||| ||| |||||||||||||| ||||| |||| ||||| ||| | ||||||||||| ||| |||||  |||| ||||||||    
T  46411741 atgataaactctccctatgagttttaactttgctacatgcttaaggttgaattcgaactcaagacattaattaaattagaaga 46411659  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 2732111 - 2732183
Alignment:
Q  85 tgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacg 158  Q
    |||||||||||| ||||||||||| ||| ||| || ||||| |||||| |||||||||| |||| || ||||||    
T  2732111 tgcatgcctaatactgaattcgaa-ccagaaccttcgttaaattagaaaaaacatgtgtcatcttatataaacg 2732183  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 9639648 - 9639709
Alignment:
Q  102 attcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    |||| ||||||||||| |||||||| | ||||| |||||||| ||||||| ||| |||||||    
T  9639648 attcaaacccaaaacactggttaagcttgaagagacatgtgtcatctcatgtaagcgctctt 9639709  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 10750642 - 10750581
Alignment:
Q  102 attcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    |||||||||||| || |||||||| |||||| | |||||| | ||||||||||| |||||||    
T  10750642 attcgaacccaagaccttggttaaattagaaaagacatgtttcatctcatctaagcgctctt 10750581  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 29124821 - 29124733
Alignment:
Q  70 gagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacg 158  Q
    ||||| |||| |||||||||||| ||||||| |||||||| ||  ||  |||||||| ||||||| ||  || | ||||||||||||||    
T  29124821 gagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagactcgtttcatctcatctaaacg 29124733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 52957488 - 52957436
Alignment:
Q  72 gttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggtta 124  Q
    |||||||| |||||||||||||||  |||||||| ||||||| || |||||||    
T  52957488 gttgtaacgctgctgcatgcctaagactgaattcaaacccaagaccttggtta 52957436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 17888816 - 17888729
Alignment:
Q  76 taactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    |||| ||| ||||||||||| | |  || |||||||||||  || |||||| ||||||| ||||| || |||||||||||||| ||||    
T  17888816 taacgctgttgcatgcctaaggttagatccgaacccaaaatcttagttaagctagaagagacatgcgtcatctcatctaaacgttctt 17888729  T

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Target: chr1; HSP #18
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 24801496 - 24801417
Alignment:
Q  31 agtcttgtgagacccagatggatgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacc 110  Q
    ||||||||| ||| || ||||| |  ||| |||||||| ||||| ||||  |||||||||||||| |||| |||||||||    
T  24801496 agtcttgtgggactcaaatggacggtaaactctccctaagagttttaacagtgctgcatgcctaaggctggattcgaacc 24801417  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 47023541 - 47023397
Alignment:
Q  7 acaattgtggagactaattcatccagtcttgtgagacccagatggatgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcg 106  Q
    |||||||  ||||||||| | || ||||||||| |||||| ||||| |||||| |||||||| ||||| ||||| || |||||||||||  ||| ||| |    
T  47023541 acaattgcagagactaatccttcgagtcttgtgggacccaaatggacgacaaactctccctaagagttttaactttgttgcatgcctaagtctggattgg 47023442  T
Q  107 aacccaaaacattggttaagttagaagaaacatgtgtgatctcat 151  Q
    |||| |  || |||||| ||||| | || |||||||| |||||||    
T  47023441 aaccaaggaccttggttgagttaaaggagacatgtgttatctcat 47023397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 7096181 - 7096087
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaa 155  Q
    |||||||| ||||| ||||| |||||||| |  ||  ||| |||| |||||||||| ||||||||| |||||||||| ||||| |||||||||||    
T  7096181 tctccctaagagttttaactttgctgcatactcaagactgtattcaaacccaaaaccttggttaagctagaagaaacctgtgtcatctcatctaa 7096087  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 35334154 - 35334249
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaa 156  Q
    |||| ||| ||||| ||||||||||||||||| || ||||||| |||||| | ||| ||||||||| ||||||| || |||   ||||||||||||    
T  35334154 tctctctaagagttttaactctgctgcatgcccaaggctgaatacgaaccaagaaccttggttaagctagaagagacttgttccatctcatctaaa 35334249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 14854690 - 14854617
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||| ||||| ||||  ||||||||||| || |||| ||||||||||| ||| ||||||||| |||||||    
T  14854690 tctccctaagagttttaacgatgctgcatgcccaaggctggattcgaacccagaaccttggttaagctagaaga 14854617  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 31307122 - 31307195
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||| ||||| |||| |||||||||||| || |||| |||||||||||  || ||||||||| |||||||    
T  31307122 tctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 31307195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 38766200 - 38766072
Alignment:
Q  35 ttgtgagacccagatggatgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||||||| ||||  | || | |||||||| ||||| |||| |||||||||||| || |||| |||| ||||||  || ||||||||| |||||||    
T  38766200 ttgtgagacccaaatgggcggcagactctccctaagagttttaacgctgctgcatgcccaaggctggattcaaacccaggaccttggttaagctagaaga 38766101  T
Q  135 aacatgtgtgatctcatctaaacgctctt 163  Q
     ||  ||   ||||||||||| |||||||    
T  38766100 gactcgttccatctcatctaagcgctctt 38766072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 45994607 - 45994505
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    |||||||| ||||| ||||  || |||||||| || |||| ||||||| |||  || ||||||||| ||||||| || |||   ||||||||||||||||    
T  45994607 tctccctaagagttttaacgttgttgcatgcccaaggctggattcgaatccaggaccttggttaagctagaagagacctgttccatctcatctaaacgct 45994508  T
Q  161 ctt 163  Q
    |||    
T  45994507 ctt 45994505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 13686736 - 13686584
Alignment:
Q  12 tgtggagactaattcatccagtcttgtgagacccagatggatgacaaaatctccc-tatgagttgtaactctgctgcatgcctaatgctgaattcgaacc 110  Q
    |||||||||||||   || || ||||||||||||| ||||| | |||| |||||| || ||||| |||| |||||||| ||| || | || |||||||||    
T  13686736 tgtggagactaatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattcgaacc 13686637  T
Q  111 caaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    ||  || |||||||||  |||||| ||   ||  ||||||||||| |||||||    
T  13686636 caggaccttggttaagcaagaagagacccatgccatctcatctaagcgctctt 13686584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 56447173 - 56447277
Alignment:
Q  56 caaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaa 155  Q
    |||| |||||||| ||||| |||| |||||||||||| |  |||| ||||||||| |  || ||||||||  ||||||||||  |||  ||||| |||||    
T  56447173 caaactctccctaagagttttaacactgctgcatgcccatagctggattcgaacctaggactttggttaaactagaagaaacccgtgacatctcttctaa 56447272  T
Q  156 acgct 160  Q
    |||||    
T  56447273 acgct 56447277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 46016234 - 46016183
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaaccca 112  Q
    |||||||| ||||| |||| |||||||||||| || |||| |||||||||||    
T  46016234 tctccctaagagttttaacactgctgcatgcccaaggctggattcgaaccca 46016183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 51853760 - 51853710
Alignment:
Q  83 gctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||||| || |||||||||||| ||| ||| |||||||||||||||||    
T  51853760 gctgcatgcccaaggctgaattcgaa-ccagaactttggttaagttagaaga 51853710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 8839337 - 8839439
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    |||||||| ||||| |||| |||||||||||| || |||| |||||||||||  || ||||||||| ||||||| ||  || | ||||||||||| ||||    
T  8839337 tctccctaagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgct 8839436  T
Q  161 ctt 163  Q
    |||    
T  8839437 ctt 8839439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 19477305 - 19477407
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    |||||||| ||||| |||| ||| |||||||| || |||| |||| |||||| ||| ||||||||| ||||||| ||  ||   ||||||||||||||||    
T  19477305 tctccctaagagttttaacactgttgcatgcccaaggctggattcaaacccagaaccttggttaagctagaagagacccgttccatctcatctaaacgct 19477404  T
Q  161 ctt 163  Q
    |||    
T  19477405 ctt 19477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 21747096 - 21747197
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    |||||||| ||||| |||| |||| |||||||||| |||| |||||| ||||  || ||||||||||||||||| ||  ||   ||||||||||||||||    
T  21747096 tctccctaagagttttaacgctgcagcatgcctaaagctggattcga-cccaggaccttggttaagttagaagagacccgttccatctcatctaaacgct 21747194  T
Q  161 ctt 163  Q
    |||    
T  21747195 ctt 21747197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 28537475 - 28537373
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    |||||||| ||||| ||||  || |||||||| || |||| ||||||||||||||| ||| ||||||||||||| ||  ||   ||||||||||| ||||    
T  28537475 tctccctaagagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgttccatctcatctaagcgct 28537376  T
Q  161 ctt 163  Q
    |||    
T  28537375 ctt 28537373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 29059890 - 29059817
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||| ||||| |||| |||||||||||| || |||| |||||||||||  || ||||||||| |||||||    
T  29059890 tctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 29059817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 31492188 - 31492115
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||| ||||| |||| |||||||||||| || |||| |||||||||||  || ||||||||| |||||||    
T  31492188 tctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 31492115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 23867469 - 23867409
Alignment:
Q  101 aattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctc 161  Q
    |||| ||||||||||| ||||||||  ||||||| |||||||| |||||| ||||||||||    
T  23867469 aatttgaacccaaaaccttggttaaactagaagagacatgtgtcatctcagctaaacgctc 23867409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 7265364 - 7265471
Alignment:
Q  56 caaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaa 155  Q
    |||| |||||||| ||||| ||||   |||||||||| ||  ||  || |||||||||||| ||||||||| ||||||| ||  |||| ||||||| |||    
T  7265364 caaactctccctaagagttttaacatcgctgcatgcccaagactagatccgaacccaaaactttggttaagctagaagagacccgtgtcatctcatataa 7265463  T
Q  156 acgctctt 163  Q
    ||||||||    
T  7265464 acgctctt 7265471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 7190415 - 7190517
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    ||||||||  |||| |||| | |||||||||| |||||||||||| ||| || ||| ||||||||| ||||||| |  | |   ||||||||||||||||    
T  7190415 tctccctaaaagttttaacacggctgcatgcccaatgctgaattcaaactcataaccttggttaagctagaagagatttattccatctcatctaaacgct 7190514  T
Q  161 ctt 163  Q
    |||    
T  7190515 ctt 7190517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 13254157 - 13254259
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    |||||||| |||||  ||| ||||||||||||||| |||| |||||||| ||  || ||||||||| ||||||| ||  ||   ||||||||||| ||||    
T  13254157 tctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttggttaagctagaagagacccgttccatctcatctaagcgct 13254256  T
Q  161 ctt 163  Q
    |||    
T  13254257 ctt 13254259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 20142116 - 20142055
Alignment:
Q  102 attcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    ||||||||| ||||| || |||||||||||| |||   |||| |||||||||||||||||||    
T  20142116 attcgaacctaaaaccttagttaagttagaataaaaccgtgtcatctcatctaaacgctctt 20142055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 28828777 - 28828894
Alignment:
Q  17 agactaattcatccagtcttgtgagacccagatggatgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaac 116  Q
    |||||||| |||  || ||||||||||||| ||||| || ||| |||| ||  ||||| |||| ||||| ||||  ||| | |||||||||||| ||||     
T  28828777 agactaatccattgagccttgtgagacccaaatggacgataaactctctctgagagttttaacgctgctacatgtttaaagttgaattcgaacctaaaat 28828876  T
Q  117 attggttaagttagaaga 134  Q
    ||| |||||| |||||||    
T  28828877 attagttaagctagaaga 28828894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 37212637 - 37212596
Alignment:
Q  120 ggttaagttagaagaaacatgtgtgatctcatctaaacgctc 161  Q
    |||||||||||||||||| ||||| | |||||||||||||||    
T  37212637 ggttaagttagaagaaacttgtgtcaactcatctaaacgctc 37212596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 18038094 - 18038150
Alignment:
Q  76 taactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaa 132  Q
    |||| ||||||||||||||| | |  |||||||| ||| ||||||||||||||||||    
T  18038094 taacgctgctgcatgcctaaagttagattcgaacacaagacattggttaagttagaa 18038150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 37568785 - 37568859
Alignment:
Q  63 tccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaac 137  Q
    |||||| ||||| |||| ||||||||||||||| |||| |||||||||||  || ||||||||| ||||||||||    
T  37568785 tccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaac 37568859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 993819 - 993737
Alignment:
Q  81 ctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    |||||||||||| || | ||||||||||||||  || ||||||||| || |||| ||| |||| ||||||||||| |||||||    
T  993819 ctgctgcatgcccaaggttgaattcgaacccaggaccttggttaagctataagagacacgtgtcatctcatctaagcgctctt 993737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 42745172 - 42745274
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    |||||||| ||||| ||||  ||||||||||| || |||| |||||||||||| || ||||||||| || |||| ||  ||   ||||||||||| ||||    
T  42745172 tctccctaagagttttaacattgctgcatgcccaaggctggattcgaacccaagaccttggttaagctataagagacccgttccatctcatctaagcgct 42745271  T
Q  161 ctt 163  Q
    |||    
T  42745272 ctt 42745274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 44732629 - 44732694
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaag 126  Q
    |||||||| ||||| |||| |||||||||||| || |||| |||||||||||  || |||||||||    
T  44732629 tctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaag 44732694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 5394481 - 5394379
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    |||||||| ||||| ||||  ||||||||||| || |||| |||||||||||  || ||||||||| ||||||| ||  ||   ||||||||||| ||||    
T  5394481 tctccctaagagttttaaca-tgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagactcgttccatctcatctaagcgct 5394383  T
Q  161 cttt 164  Q
    ||||    
T  5394382 cttt 5394379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 39401148 - 39401227
Alignment:
Q  84 ctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    ||||||||| || |||||||||||| |||| |  |||||||||||| || | ||  |||| |||||||||||||| ||||    
T  39401148 ctgcatgcccaaggctgaattcgaatccaagatcttggttaagttaaaaaagactcgtgtcatctcatctaaacgttctt 39401227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 8507132 - 8507201
Alignment:
Q  94 aatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    ||||||||||||||||||||||| ||  ||||| |||||||||   |||| |||||||||||||||||||    
T  8507132 aatgctgaattcgaacccaaaaccttaattaagctagaagaaatcggtgtcatctcatctaaacgctctt 8507201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 25084132 - 25084025
Alignment:
Q  48 atggatgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatc 147  Q
    |||||||||||  |||||||| ||||| ||||  ||||||||| | ||  |||||||||||| ||| || ||| ||||| ||||||| || ||||| |||    
T  25084132 atggatgacaagctctccctaagagttttaacattgctgcatgtccaagactgaattcgaactcaagactttgattaagctagaagagacttgtgtcatc 25084033  T
Q  148 tcatctaa 155  Q
    ||||||||    
T  25084032 tcatctaa 25084025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 12836953 - 12837004
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaaccca 112  Q
    |||||||| ||||| |||| ||||||||||||||| |||| |||||||||||    
T  12836953 tctccctaagagttttaacgctgctgcatgcctaaggctggattcgaaccca 12837004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 12411229 - 12411139
Alignment:
Q  65 cctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaa 155  Q
    |||| ||||| |||| |||||||||||| || |||| |||||||| ||  || ||||||||||||||||| || |||   |||||||||||    
T  12411229 cctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttggttaagttagaagagacctgttccatctcatctaa 12411139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 21910266 - 21910188
Alignment:
Q  85 tgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    |||||||| || |||| |||||||||||  |  ||||||||| ||||||| || ||| | |||||||||||||||||||    
T  21910266 tgcatgcccaaggctggattcgaacccaggatcttggttaagctagaagagacttgtttcatctcatctaaacgctctt 21910188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 28099341 - 28099255
Alignment:
Q  48 atggatgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    ||||| |||||| ||||||||  |||| |||| |||||||||||| || |||| |||||||||||  || || |||||| |||||||    
T  28099341 atggacgacaaattctccctaaaagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttagttaaggtagaaga 28099255  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 15614666 - 15614702
Alignment:
Q  98 ctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||||||||||  ||||||||||||||||||||    
T  15614666 ctgaattcgaacccatgacattggttaagttagaaga 15614702  T

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Target: chr6; HSP #8
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 31107549 - 31107648
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    |||||| | ||||| |||| ||| |||||| | ||||||| |||||||| || ||| || |||||||||||||| ||   | | ||||||||||||||||    
T  31107549 tctcccaaagagttttaacgctgttgcatgtccaatgctggattcgaactcagaaccttagttaagttagaagagacccatttcatctcatctaaacgct 31107648  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 2744044 - 2743916
Alignment:
Q  35 ttgtgagacccagatggatgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    ||||| |||||| ||||| ||||   |||||||| ||||| |||| |||||||||||| || |||| |||||||||||  || ||||||||| |||||||    
T  2744044 ttgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 2743945  T
Q  135 aacatgtgtgatctcatctaaacgctctt 163  Q
     ||  ||   |||||||||||| ||||||    
T  2743944 gacccgttccatctcatctaaatgctctt 2743916  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 40320180 - 40320096
Alignment:
Q  79 ctctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    |||||||||||||  |||| ||||||| ||| ||  |||||||||||| ||||| | |||||||| ||||||| |||||||||||    
T  40320180 ctctgctgcatgctcaatgttgaattcaaactcaggacattggttaagatagaaaagacatgtgtcatctcatttaaacgctctt 40320096  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 12958141 - 12958214
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||| ||||| |||| |||||||||||| ||||||| |||| ||||||  || ||||||||| |||||||    
T  12958141 tctccctaagagttttaacgctgctgcatgcccaatgctggattcaaacccatgaccttggttaagctagaaga 12958214  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 19715782 - 19715882
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    |||||||  ||||| |||| |||||||||||| || |||| |||||||||||  || ||||||||| ||||| | ||||||   ||||||||||| ||||    
T  19715782 tctccctgagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaaagacatgttccatctcatctaagcgct 19715881  T
Q  161 c 161  Q
    |    
T  19715882 c 19715882  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 27121816 - 27121899
Alignment:
Q  71 agttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatcta 154  Q
    |||| |||| ||| ||||||| ||| |||| ||||||||||| ||| ||||||||| ||||||| ||  |||| ||||||||||    
T  27121816 agttttaacactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagacccgtgttatctcatcta 27121899  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 30056057 - 30056152
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaa 156  Q
    |||||||| ||||| |||  ||||||||||||||| |||| ||| |||||||  || || |||||| ||||||| ||||||   ||||||||||||    
T  30056057 tctccctaagagttttaatgctgctgcatgcctaaggctggatttgaacccatgaccttcgttaagctagaagagacatgttccatctcatctaaa 30056152  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 36994551 - 36994658
Alignment:
Q  56 caaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaa 155  Q
    |||| ||||| || ||||| |||| |||||||||| | || |||| |||||||||||  || ||||||||  ||||||| |||||||  |||| ||||||    
T  36994551 caaactctccttaagagttttaacgctgctgcatgtccaaggctggattcgaacccaggaccttggttaaactagaagagacatgtgccatcttatctaa 36994650  T
Q  156 acgctctt 163  Q
     |||||||    
T  36994651 gcgctctt 36994658  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 4125080 - 4125153
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||| ||||| ||||  ||||||||||| || |||  |||||||||||  |||||||||||| |||||||    
T  4125080 tctccctaagagttttaacagtgctgcatgcccaaggcttgattcgaacccaggacattggttaagctagaaga 4125153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 28377722 - 28377641
Alignment:
Q  82 tgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    ||||||||||||||||||| |||||||| ||  || ||| ||||| || |||||||  |||| ||||||| ||| |||||||    
T  28377722 tgctgcatgcctaatgctggattcgaactcatgactttgattaagctaaaagaaactcgtgttatctcatgtaagcgctctt 28377641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 30936089 - 30936016
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||| ||||| ||||  |||||||||| ||| |||| |||||||| ||  || |||||||||||||||||    
T  30936089 tctccctaagagttttaacgttgctgcatgcttaaggctggattcgaactcaggaccttggttaagttagaaga 30936016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 35207076 - 35206991
Alignment:
Q  70 gagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaa 155  Q
    ||||| |||| |||||||||| | || | | |||||||||||| ||  ||||||||||||||||| || ||| | |||||||||||    
T  35207076 gagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaagagacctgtttcatctcatctaa 35206991  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 30785016 - 30785144
Alignment:
Q  35 ttgtgagacccagatggatgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||||| | ||||||| || | |||||||| ||||| ||||  ||||||||| | || |||| |||||||||||| |||||| ||||| |||||||    
T  30785016 ttgtgagacctaaatggatggcagattctccctaagagttttaacgttgctgcatgtccaaagctggattcgaacccaagacattgattaagctagaaga 30785115  T
Q  135 aacatgtgtgatctcatctaaacgctctt 163  Q
     ||  ||   |||||||||||| ||||||    
T  30785116 gactcgttccatctcatctaaatgctctt 30785144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 2804538 - 2804614
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaac 137  Q
    ||||||||  |||| |||| |||||||||||  || | || ||||||||||||||| ||||||||| ||||||||||    
T  2804538 tctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccaaaaccttggttaagctagaagaaac 2804614  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 5652985 - 5652904
Alignment:
Q  82 tgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgctctt 163  Q
    |||||||||| |||  |||| |||||||| |  || |||||||||||| ||||||  ||| | |||||||||||||||||||    
T  5652985 tgctgcatgcataaaactgatttcgaaccaatgactttggttaagttaaaagaaatgtgtatcatctcatctaaacgctctt 5652904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 10592012 - 10591939
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||| ||||| |||| |||||||||||| || |||| |||||||||||  || ||||||||  |||||||    
T  10592012 tctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaatctagaaga 10591939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 31113419 - 31113370
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacc 110  Q
    |||||||| ||||| |||| |||||||||||| || ||||||||||||||    
T  31113419 tctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacc 31113370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 2798371 - 2798447
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaac 137  Q
    ||||||||  |||| |||| |||||||||||  || | || ||||||||||| ||| ||||||||| ||||||||||    
T  2798371 tctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccagaaccttggttaagctagaagaaac 2798447  T

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Target: scaffold0182 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 26416 - 26343
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    |||||||| ||||| |||| |||||||||||| || |||| |||||||||||  || ||||||||| |||||||    
T  26416 tctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaga 26343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 48204348 - 48204440
Alignment:
Q  42 acccagatggatgacaaaatctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 134  Q
    ||||| ||||| |||||  |||||||| | ||| ||||  ||||||||||| || |||| |||||||||||| || ||||||||| |||||||    
T  48204348 acccaaatggacgacaagctctccctaagggttttaacgttgctgcatgcccaaggctggattcgaacccaagaccttggttaagctagaaga 48204440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 38088720 - 38088618
Alignment:
Q  61 tctccctatgagttgtaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacgct 160  Q
    |||||||| ||||| |||| || ||||||||| || |||| |||||||||   ||| ||||||||| ||||||| ||  || | ||||||||||| ||||    
T  38088720 tctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgtttcatctcatctaagcgct 38088621  T
Q  161 ctt 163  Q
    |||    
T  38088620 ctt 38088618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 1386918 - 1386859
Alignment:
Q  84 ctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgt 143  Q
    ||||||||||||  |||||||||||  ||| || ||| ||||||||||||| ||||||||    
T  1386918 ctgcatgcctaagactgaattcgaattcaagaccttgattaagttagaagagacatgtgt 1386859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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