View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4768-Insertion-28 (Length: 235)
Name: NF4768-Insertion-28
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768-Insertion-28 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 55 - 235
Target Start/End: Original strand, 36956008 - 36956188
Alignment:
| Q |
55 |
aatcatatcacatattgatctttttagttaacattgattgtgattgaatattgttttgatttcattataggtgttagagttggggattattgttcactct |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36956008 |
aatcatatcacatattgatctttttagttaacattgattgtgattgaatattgttttgatttcattataggtgttggagttggggattattgttcactct |
36956107 |
T |
|
| Q |
155 |
gttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggccgctcgtagctgcgttgacctttcatcaa |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36956108 |
gttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggccgcttgtagctgcgttgacctttcatcaa |
36956188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 36939484 - 36939610
Alignment:
| Q |
108 |
ttttgatttcattataggtgttagagttggggattattgttcactctgttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggcc |
207 |
Q |
| |
|
|||||||||||| |||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
36939484 |
ttttgatttcataataggtattggagttgggaattattgttcactccgttataataggaatttctctgggtgcttcagagagtcctaagactataaggcc |
36939583 |
T |
|
| Q |
208 |
gctcgtagctgcgttgacctttcatca |
234 |
Q |
| |
|
| || ||||| ||||| |||||||| |
|
|
| T |
36939584 |
attggtcgctgcattgacttttcatca |
36939610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 36993649 - 36993775
Alignment:
| Q |
108 |
ttttgatttcattataggtgttagagttggggattattgttcactctgttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggcc |
207 |
Q |
| |
|
||||||||| || ||||||||| |||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| || |
|
|
| T |
36993649 |
ttttgattttatcataggtgttggagttgggaattattgttcactctgttatcataggaatttctttaggtgcttcagagagtcctaaaaccataagacc |
36993748 |
T |
|
| Q |
208 |
gctcgtagctgcgttgacctttcatca |
234 |
Q |
| |
|
| || ||||||||||| |||||||| |
|
|
| T |
36993749 |
attagtggctgcgttgacttttcatca |
36993775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 37019089 - 37019215
Alignment:
| Q |
108 |
ttttgatttcattataggtgttagagttggggattattgttcactctgttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggcc |
207 |
Q |
| |
|
||||||||| || ||||||||| |||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| || |
|
|
| T |
37019089 |
ttttgattttatcataggtgttggagttgggaattattgttcactctgttatcataggaatttctttaggtgcttcagagagtcctaaaaccataagacc |
37019188 |
T |
|
| Q |
208 |
gctcgtagctgcgttgacctttcatca |
234 |
Q |
| |
|
| || ||||||||||| |||||||| |
|
|
| T |
37019189 |
attagtggctgcgttgacttttcatca |
37019215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University