View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768-Insertion-4 (Length: 507)
Name: NF4768-Insertion-4
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 507
Target Start/End: Original strand, 38841824 - 38842307
Alignment:
| Q |
12 |
taagtatattttctatcaacttttctactatcgccgtctatcatttggagaaatatcttaggttgaaatctaagagaaattaaaaaagacatcaaaattt |
111 |
Q |
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| T |
38841824 |
taagtatattttctatcaacttttctactatcgccgtctatcatttggagaaatatcttaggttgaaatctaagaaaaattaaaaaagacat------tt |
38841917 |
T |
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| Q |
112 |
gctcaaatggcaaagggtaaaagtgcacttatgatttaacccgttaattaagggttaggataacacagccgcaaaagattcaccaaattataggctggtt |
211 |
Q |
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| T |
38841918 |
gctcaaatggcaaagggtaaaagtgcatttatgatttatcccatttat---gggttaggataacacagctgcaaaagattcaccaaattataagctggtt |
38842014 |
T |
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| Q |
212 |
cctagaaagcaagattcatcaaattatactagttcattcggggacgacatggctagttaagaattgagacctaatgctaatcaatcaatgaaaaaatgaa |
311 |
Q |
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| T |
38842015 |
ccttgaaagcaagattcatcaaattatactagttcattcggggac---atggctagttaagaattgagacctaatgctaatcaatcaatgaaaaaatgaa |
38842111 |
T |
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| Q |
312 |
cttcgtgaatacatgactaaaatctttgacatccttctaagttataattcatggggaatatagcacttcatctttgatatccttctacaaccacaagacc |
411 |
Q |
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| T |
38842112 |
cttcgtgaatacatgactaaaatctttgacatccttctaagttataattcatggggaatatagcacttcatctttgatatccttctacaaccacaagacc |
38842211 |
T |
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| Q |
412 |
ctatatccttgactagcaagtaatgatatgaggcagcacaagtacacaacaccatattagatttatttttcctagtccaaactcattaatttttcc |
507 |
Q |
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| T |
38842212 |
ctatatccttgagtggcaagtaatgatatgaggcagcacaagtacacaacatcatattggatttattttttctagtccaaactcattaatttttcc |
38842307 |
T |
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