View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768-Insertion-6 (Length: 395)
Name: NF4768-Insertion-6
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768-Insertion-6 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 393
Target Start/End: Original strand, 159025 - 159408
Alignment:
| Q |
8 |
aatcattttccttgtgaccaatttcgatacattgaaatttgtaaacaacttaagcgttgaaatcctggcgagtgatttagtcggcatatcaagcttactg |
107 |
Q |
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| T |
159025 |
aatcattttccttgtgaccaatttcgatacattgaaatttgtaaacaacttaagtgttcaaatcctggcgagtgatttagtcggcatatcaagcttactg |
159124 |
T |
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| Q |
108 |
caaaagatatatctagacgagtatgaggcggataggtccgtctcaagatcatcagtctgacatatttctctatcaatcaatcacttcaccagcctttgtt |
207 |
Q |
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| T |
159125 |
caaaagatatatctagacgagtatgaggcagataggtccgtctcacg---atcagtctgacatatttctctatcaatcaatcacttcaccagcctttgtt |
159221 |
T |
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| Q |
208 |
ggcttgcatctttatattaggc----ttaattaattggaatttctgctacttcagtacatattttctgttgtctatgagtatacatttctttagatccaa |
303 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
159222 |
ggcttgcatctttatattaggcttaattaattaattgcaatttctgctgcttcagtacatactttctgttgtc--tgagtatacatttctttagatccaa |
159319 |
T |
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| Q |
304 |
atccttaatttcaaacatctagattaacttctacttcaagcttgggagttcagcttgaacattgctcataacaataatatctttgctttg |
393 |
Q |
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| T |
159320 |
atcctaaatttcaaacatctaga-taacttctaattcaagcttgtgagttctgcttgaacattgctcataacaataatatctttgctttg |
159408 |
T |
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