View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4768-Insertion-7 (Length: 321)

Name: NF4768-Insertion-7
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4768-Insertion-7
NF4768-Insertion-7
[»] chr7 (1 HSPs)
chr7 (8-321)||(38357424-38357737)


Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 38357424 - 38357737
Alignment:
Q  8 caacgatgccaagcaatgtcaatccatcttctctaagcatttgatgtgattttttctcccttttgatcatataatcaatatcttcggaatctgaaatctc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38357424 caacgatgccaagcaatgtcaatccatcttctctaagcatttgatgtgattttttctcccttttgatcatataatcaatatcttcggaatctgaaatctc 38357523  T
Q  108 cgtgtgagcaaaagcaatacatcttagactactagcagccataccttgaatgattctctcaattttactgcgttcttcttcatcaagggacttcctcgcg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38357524 cgtgtgagcaaaagcaatacatcttagactactagcagccataacttgaatgattctctcaattttactccgttcttcttcatcaagggacttcctcgcg 38357623  T
Q  208 ccgttactatcaatatagtttgtacacattgcaagtatcatctctgcagctcctttccaatgcacgtgaacgctgttgtcgtcgttctctttccttatag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38357624 ccgttactatcaatatagtttgtacacattgcaagtatcatctctgcagctcctttccaatgcacgtgaacgctgttgtcgtcgttctctttccttatag 38357723  T
Q  308 caacaccgcttcgt 321  Q
    ||||||||||||||    
T  38357724 caacaccgcttcgt 38357737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University