View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768-Insertion-9 (Length: 339)
Name: NF4768-Insertion-9
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768-Insertion-9 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0003 (2 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 29 - 339
Target Start/End: Original strand, 5662761 - 5663074
Alignment:
| Q |
29 |
gtaaatgataaacaattaatgctaaccgtttccaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccctcctctctttccatc |
128 |
Q |
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|||||||| |||||||||||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
5662761 |
gtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaaccctcctctctctccatc |
5662860 |
T |
|
| Q |
129 |
tctctgcgattccgcatctccaccccctttctctcgcacccattctctccatcgc-caccgtccactccccctttctctgtaaatcgtgattcttccact |
227 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5662861 |
tctctgtgattccccatctccaccccctttctctcgcacccattctccccatcgcacaccgtccactccccctttctctgtaaatcgtgattcttccact |
5662960 |
T |
|
| Q |
228 |
tcttcctctcgggttctgcttctacatttatatccatttccaaattcgcccaaatacgccc--atccgtgctcaataaaacgaaagaacacggttgaatg |
325 |
Q |
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| T |
5662961 |
tcttcctctcgggttctgcttctacatctatatccatttccaaatttgcccaaatacgcccatatccgtgttcaataaaacggaaaaacacggttgaatg |
5663060 |
T |
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| Q |
326 |
attattcaatacaa |
339 |
Q |
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||||||| |||||| |
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| T |
5663061 |
attattctatacaa |
5663074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 92 - 339
Target Start/End: Original strand, 52131068 - 52131313
Alignment:
| Q |
92 |
aaccatggctctgacctaaccctcctctctttccatctctctgcgattccgcatctccaccccctttctctcgcacccattctctccatcgccaccgtcc |
191 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
52131068 |
aaccatggctctgacctaaccctcctctctctccatctctctacgattccccatctccaccccctttctcttgcacccattctccccatcgccaccgtcc |
52131167 |
T |
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| Q |
192 |
actccccctttctctgtaaatcgtgattcttccacttcttcctctcgggttctgcttctacatttatatccatttccaaattcgcccaaatacgcccatc |
291 |
Q |
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| T |
52131168 |
agtcccgccacc-ctgtaaatcgtgattcttccacttcttcctctcgggttatgcttctacatctatatccatatccaaattcgcccaaatacgcccatc |
52131266 |
T |
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| Q |
292 |
cgtgctcaataaaacgaaagaacacggttgaatgattattcaatacaa |
339 |
Q |
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|||| ||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
52131267 |
cgtgttcagtaaaacg-aagaacacggttgaatgattattcaatacaa |
52131313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 31688059 - 31688144
Alignment:
| Q |
29 |
gtaaatgataaacaattaatgctaaccgtttccaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccct |
114 |
Q |
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| T |
31688059 |
gtaaatgacaaataattaatgttatcggtttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaaccct |
31688144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 31896808 - 31896723
Alignment:
| Q |
29 |
gtaaatgataaacaattaatgctaaccgtttccaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccct |
114 |
Q |
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| T |
31896808 |
gtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaaccct |
31896723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 31912517 - 31912432
Alignment:
| Q |
29 |
gtaaatgataaacaattaatgctaaccgtttccaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccct |
114 |
Q |
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|||||||| ||| |||||||| || | ||||||||| || ||||||||||||||| ||||| ||| ||||||||||||||||||| |
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| T |
31912517 |
gtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaaccct |
31912432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 31946137 - 31946080
Alignment:
| Q |
57 |
tttccaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccct |
114 |
Q |
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| T |
31946137 |
tttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaaccct |
31946080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 70 - 339
Target Start/End: Complemental strand, 11649515 - 11649260
Alignment:
| Q |
70 |
gttgcatatccatctcattgggaaccatggctctgacctaaccctcctctctttccatctctctgcgattccgcatctccaccccctttctctcgcaccc |
169 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||||||| | |||||| |||||||||| |||||||||||||||| |
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| T |
11649515 |
gttgcatatccatctcattggaaaccatggctttgacctaaccctcctttctctccatctat----gattccccatctccaccgcctttctctcgcaccc |
11649420 |
T |
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| Q |
170 |
attctctccatcgccaccgtccactccccctttctctgtaaatcgtgattcttccacttcttcctctcgggttctgcttctacatttatatccatttcca |
269 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
11649419 |
attctccccatcgccaccgtccactccccctttctctgtaaatcgtgattcttccacttcttcctctcgggttctgcttctacatctatatccatat--- |
11649323 |
T |
|
| Q |
270 |
aattcgcccaaatacgcccatccgtgctcaataaaacgaaagaacacggttgaatgattattcaatacaa |
339 |
Q |
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||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||| |
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| T |
11649322 |
-------ccaaatacgcccatccgtgttcactaaaaaggaagaacacggttgaatgattattcaatacaa |
11649260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 22007561 - 22007612
Alignment:
| Q |
203 |
ctctgtaaatcgtgattcttccacttcttcctctcgggttctgcttctacat |
254 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||| |||||||||| |
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| T |
22007561 |
ctctgtaaatcgcgattcttccacttcttcctctcggcttccgcttctacat |
22007612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 22007660 - 22007717
Alignment:
| Q |
281 |
atacgcccatccgtgctcaataaaacgaaagaacacggttgaatgattattcaataca |
338 |
Q |
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|||||||| || ||| ||| ||||| | |||||||| ||||||||||||||||||||| |
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| T |
22007660 |
atacgcccctctgtgttcagtaaaaaggaagaacactgttgaatgattattcaataca |
22007717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 36873 - 36755
Alignment:
| Q |
29 |
gtaaatgataaacaattaatgctaaccgtttccaatacagcgttgcatatccatctcattgggaaccatggctctgacctaaccctcctctctttccatc |
128 |
Q |
| |
|
|||||||| ||| |||||||| || | ||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||| ||| |||||| |
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| T |
36873 |
gtaaatgacaaataattaatgttatcggtttccaatacagtgttgcatatccatctcattggaaacaatggctctgacttaaccctcctttctctccatc |
36774 |
T |
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| Q |
129 |
tctctgcgattccgcatct |
147 |
Q |
| |
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||||| ||||||| ||||| |
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| T |
36773 |
tctctacgattcctcatct |
36755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 43023 - 42943
Alignment:
| Q |
62 |
aatacagcgttgcatatccatctcattgggaacca-tggctctgacctaaccctcctctctttccatctctctgcgattcc |
141 |
Q |
| |
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||||||| ||||||||||||| |||||||||| || ||||||||||||||||||||| ||| ||||||||||| ||||||| |
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| T |
43023 |
aatacagtgttgcatatccatttcattgggaaacaatggctctgacctaaccctcctttctctccatctctctacgattcc |
42943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 27444338 - 27444418
Alignment:
| Q |
62 |
aatacagcgttgcatatccatctcattgggaacca-tggctctgacctaaccctcctctctttccatctctctgcgattcc |
141 |
Q |
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||||||| ||||||||||||| |||||||||| || ||||||||||||||||||||| ||| ||||||||||| ||||||| |
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| T |
27444338 |
aatacagtgttgcatatccatttcattgggaaacaatggctctgacctaaccctcctttctctccatctctctacgattcc |
27444418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 4660158 - 4660112
Alignment:
| Q |
83 |
ctcattgggaaccatggctctgacctaaccctcctctctttccatct |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4660158 |
ctcattgggaaccatggctctgacctaaccctcctctctctccatct |
4660112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 7456 - 7410
Alignment:
| Q |
83 |
ctcattgggaaccatggctctgacctaaccctcctctctttccatct |
129 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7456 |
ctcattgggaaccatggctctgacctaaccctcctctctctccatct |
7410 |
T |
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