View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768_high_14 (Length: 234)
Name: NF4768_high_14
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 7608300 - 7608195
Alignment:
| Q |
18 |
ccaacaaacctcagcccttggatctaatctgtttgccattttttcctccttgcttacgtgacaaaattaattgtattcagactttccaacttatgcggtc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| ||| |
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| T |
7608300 |
ccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtattca-actttccaactgatgccgtc |
7608202 |
T |
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| Q |
118 |
aaattaa |
124 |
Q |
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||||||| |
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| T |
7608201 |
aaattaa |
7608195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 31771288 - 31771183
Alignment:
| Q |
18 |
ccaacaaacctcagcccttggatctaatctgtttgccattttttcctccttgcttacgtgacaaaattaattgtattcagactttccaacttatgcggtc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| ||| |
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| T |
31771288 |
ccaacaaacctcagcccttggatctaatctgtttgccagtttttcctcctttcttacgtgacaaaattaattgtattca-actttccaactgatgccgtc |
31771190 |
T |
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| Q |
118 |
aaattaa |
124 |
Q |
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||||||| |
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| T |
31771189 |
aaattaa |
31771183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 31771357 - 31771310
Alignment:
| Q |
18 |
ccaacaaacctcagcccttggatctaatctgtttgccattttttcctc |
65 |
Q |
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| T |
31771357 |
ccaacaaacctcagcccttggatctaatctgtttgcaattttttcctc |
31771310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 7608369 - 7608319
Alignment:
| Q |
18 |
ccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctt |
68 |
Q |
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| T |
7608369 |
ccaacaaatctcagcccttggatctaatctgtttgcaattttttcctcctt |
7608319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 35349204 - 35349283
Alignment:
| Q |
99 |
ctttccaacttatgcggtcaaattaaaatgccttttgttttcccatgcaaaagtggtgtaccaaggctatgagcttttat |
178 |
Q |
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||||||||||| ||| |||||||||| | |||||||||||||||||||| ||| ||||||||||||| | |||||||| |
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| T |
35349204 |
ctttccaacttctgccgtcaaattaagcaggcttttgttttcccatgcaaatgtgttgtaccaaggctaggtgcttttat |
35349283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 38467540 - 38467450
Alignment:
| Q |
99 |
ctttccaacttatgcggtcaaattaaaatgccttttgttttcccatgcaaaagtggtgtaccaaggctatgagcttttatggcatatgattt |
190 |
Q |
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||||||||||| ||| |||||||||| | |||||||||||| ||||||| ||| ||||||||||||| | ||||||||| |||||||||| |
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| T |
38467540 |
ctttccaacttctgccgtcaaattaagtaggcttttgttttcc-atgcaaatgtgttgtaccaaggctaggtgcttttatgacatatgattt |
38467450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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