View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768_high_17 (Length: 211)
Name: NF4768_high_17
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 37830822 - 37830647
Alignment:
| Q |
18 |
aagaaacggtcttagcaacagtacagactaaagaaaacacactaattgaacacccccaagtgtctggtcaacaattcttccattatgtttgatgagtaag |
117 |
Q |
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| T |
37830822 |
aagaaacggtcttagcaatagtacagactaaagaaaacacactaattgaacacccccaagtgtctggtcaacaattcttccattatgtttgatgagtaag |
37830723 |
T |
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| Q |
118 |
agggtaaatttgttacaaaagaacatctcattgttaaagtcaaatgacaccatatcatatttttggtccaaccaat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37830722 |
agggtaaatttgttacaaaagaacatctcattgttaaagtcaaatgacaccatatcatatttttggtccaaccaat |
37830647 |
T |
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Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 22535272 - 22535442
Alignment:
| Q |
18 |
aagaaacggtcttagcaacagtacagactaaagaaaacacactaattgaacacccccaagtgtctggtcaacaattcttccattatgtttgatgagtaag |
117 |
Q |
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||||| |||| ||||| |||||| ||||||||| || |||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22535272 |
aagaagcggtgttagcgacagtatagactaaagcaa-cacactgatttaacacccccaagtgtctgttcaacaattcttccattatgtttgatgagtaag |
22535370 |
T |
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| Q |
118 |
agggtaaatttgttacaaaagaacatctcattgttaaagtcaaatgacaccatatcatatttttggtccaaccaat |
193 |
Q |
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||||||||||||||| | |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |
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| T |
22535371 |
ggggtaaatttgttac-agagaacatctcattgctaaagtcaaatgacaccat---atattttttgtccaaccaat |
22535442 |
T |
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