View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768_high_6 (Length: 346)
Name: NF4768_high_6
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 145 - 329
Target Start/End: Complemental strand, 351685 - 351496
Alignment:
| Q |
145 |
gaaaatctattacaatgtatttttccttaattaccccaaaccattcaattgacatctcatcaaaactt-----attttgtctaaaatttactttttccaa |
239 |
Q |
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| T |
351685 |
gaaaatctattacaatgtatttttccttaattaccccaaaccattcaattggcatctcatcaaaactttagttattttgtctaaaatttactttttccaa |
351586 |
T |
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| Q |
240 |
ccaaactaacctaccttatcatttggctatgcaaaatacaaacaaacccaaattatcggtttgcctacatcagttccttaagaaattctt |
329 |
Q |
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| T |
351585 |
ccaaactaacctaccttatcatttggctatgcaaaatacaaacaaacccaaattatcggtttgcctacatcagttccttaagaaattctt |
351496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 351831 - 351751
Alignment:
| Q |
3 |
aaatatcaccatttttggcacgtccaaagttgcatagtagctagctaattaatatcggatgggatttcgtctattcggttc |
83 |
Q |
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| T |
351831 |
aaatatcaccatttttggcacgtccaaagttgcatagtagctagctaattaatatcggatgggatttcgtctattcggttc |
351751 |
T |
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