View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4768_low_1 (Length: 562)
Name: NF4768_low_1
Description: NF4768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4768_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 21 - 546
Target Start/End: Complemental strand, 379848 - 379323
Alignment:
| Q |
21 |
agtgcagtgataacctgcaattaggtatgttcacggtttatgaaaaaccaagttgaactgtgagctataccaagtcatattgaaaaagagccaaattgtt |
120 |
Q |
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| T |
379848 |
agtgcagtgataacctgcaattaggtatgttcacggtttatgaaaaaccaagttgaactgtgagctataccaagtcatattgaaaaagagccaaattgtt |
379749 |
T |
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| Q |
121 |
gacacacctcagtttgatgaaccactattttaataaggttccactaagtgaacannnnnnnaattgtttaatctaatggctaaaatgtcattctaagatg |
220 |
Q |
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| T |
379748 |
gacacacctcagtttgatgaaacgctattttaataaggttccactaagtgaacatttttttaattgtttaatctaatggctaaaatttcattctaagatg |
379649 |
T |
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| Q |
221 |
aatatattgaaatatgagatttgaattgcaagtgttgaatatggcaatgtgttaatctcttgatgatggtaggtgagcacaaacacatcatacggaccac |
320 |
Q |
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| T |
379648 |
aatatattgaaatatgagattcgaattgcaagtgttgaatatggcaatgtgttaatctcttgatgatggtaggtgagcacaaacacatcatacggaccac |
379549 |
T |
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| Q |
321 |
cacaatattgatccattggttgtggctcctcctcctagaccacaacgactcatcatcatgacatccgtcgcctcctccgccgccacatggtgctggtggg |
420 |
Q |
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| T |
379548 |
cacaatattgatccattggttgtggctcctcctcctagaccacaacgactcatcatcatgacatccgtcgcctcctccgcctccacatggtgctggtggg |
379449 |
T |
|
| Q |
421 |
gttcaagctcattcaactaaggtggtccagatcaggggcagatcttcttaggagtccatggtagccatggctccccctaaatatggtattaatattgtat |
520 |
Q |
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| T |
379448 |
gttcaagctcattcaactaaggtggtccagatcaggggcaaatcttcttaggagtccatggtaaccatggctccccccaaatatggtattaatattgtat |
379349 |
T |
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| Q |
521 |
caatcatacttaatcaggcttttcat |
546 |
Q |
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| T |
379348 |
catgcatacttaatgaggcttttcat |
379323 |
T |
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Back To:
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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 10574361 - 10574315
Alignment:
| Q |
453 |
caggggcagatcttcttaggagtccatggtagccatggctcccccta |
499 |
Q |
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| T |
10574361 |
caggggcggatcttcttgggagcccatggtagccatggctcccccta |
10574315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 42148821 - 42148764
Alignment:
| Q |
459 |
cagatcttcttaggagtccatggtagccatggctccccctaaatatggtattaatatt |
516 |
Q |
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|||||||||||| ||| |||||||||||||||||||||| |||| | ||||| ||||| |
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| T |
42148821 |
cagatcttcttaagagcccatggtagccatggctccccccaaatttcgtatttatatt |
42148764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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